Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1956 ATGTGGAATGAAGAAAGCGATTGGATCGGTTCCTTTGATTCTCAGTTGGCGCGGTTGGCGGAGTGCAGGATGTGTTCGCGCGACAGAGGGGAGCGCCCCGACGCGACGGGGATGGACTTAGAGGTGCTGGAGGTGGCCGAGGAGGGCAGTTACGGGCGGGTGTTCCGGTGCCTCGACATCCACACCGGCGCCCTCGTGACCATGAAGCAGATCACGATGGTCCGCTTGAGCCAGGGCGTTCCGGCGCCAATAATCCGTGAAGTGTCGCTCCTCAAAGAACTCCACCACGCCAACATCGTGAAGCTGCTCAGGGTGGGACTAACCGAGAATAGGTACGTCAACCTCGTCTTCGAGCATCTTGATTACGATCTTCATCACTTCATTGTCAACCGAGGTTACCCCAAGGATGCCTTGACTGTTAAGAGTTTCATGTACCAGATACTCTCTGCTGTGGCTTACTGTCACTCGCTTAAGGTTCTGCACAGAGATTTGAAACCAAGCAATGTGCTGATTGATCATTCCAAAAGGTTGATCAAGTTGGCGGATTTCCGTTTGGCTGGAGAGTTTGCAGATGACTTGTTATATACTGAGAAGTTAGGAACTTCCTGGTACAGGGCACCTGAAATCTTGTGTGACTCTAGACAATATTCAACTCAAATTGATTTGTGGTCTGTTGGCTGCATATTTGCTGAGATGGTAATTGGACAGCCTTTAGTCCAAGCTATTAATTGCCGGGATGAATTGGAGGGGATTTTCAAATTATTAGGTACCCCCACAGAGGAAACATGGCCAGGAATCACCAAATTAATGCCTAACCTTCATATCTACTACCCCAAATTTGATGCATTGGGCCTGGAAACATTTGTTACTGATCTGGAACCAAGTGGCCTGAATCTACTATCAATGATGCTTTGCTTGGACCCAAGTAGAAGGATTTCTGCGGAAGCTGCTCTAAAGCATGCTTACTTTATAGATGTTAATTATGTATCTCTTCTGCTTCTCTAA 1005 0.4806 MWNEESDWIGSFDSQLARLAECRMCSRDRGERPDATGMDLEVLEVAEEGSYGRVFRCLDIHTGALVTMKQITMVRLSQGVPAPIIREVSLLKELHHANIVKLLRVGLTENRYVNLVFEHLDYDLHHFIVNRGYPKDALTVKSFMYQILSAVAYCHSLKVLHRDLKPSNVLIDHSKRLIKLADFRLAGEFADDLLYTEKLGTSWYRAPEILCDSRQYSTQIDLWSVGCIFAEMVIGQPLVQAINCRDELEGIFKLLGTPTEETWPGITKLMPNLHIYYPKFDALGLETFVTDLEPSGLNLLSMMLCLDPSRRISAEAALKHAYFIDVNYVSLLLL* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1956 334 SMART serkin_6 40 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1956 334 Gene3D Transferase(Phosphotransferase) domain 1 120 323 - -
Gso8g1956 334 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Gso8g1956 334 ProSiteProfiles Protein kinase domain profile. 40 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1956 334 Pfam Protein kinase domain 48 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1956 334 PANTHER CYCLIN-DEPENDENT KINASE 18 329 - -
Gso8g1956 334 SUPERFAMILY Protein kinase-like (PK-like) 41 328 IPR011009 -
Gso8g1956 334 PANTHER CELL DIVISION PROTEIN KINASE 18 329 - -
Gso8g1956 334 Gene3D Phosphorylase Kinase; domain 1 41 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1956 Gso-Chr8 19844331 19847657 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1956 41 327 Core Cell Cycle Gene Families AT3G48750 48.443 3.14e-89 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Gso8g1956 Pkinase 2.9e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1956 K02206 - gmx:100810997 676.781