Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1955 ATGACTTGTTTCCCATTCTCATTTGGTAAGAAAGTGCGCTTTGTGGCAACACATGATCCAGATATTGATGAAGTACTCTCAGGCATTCAAAATGTAAGAATCTATACCTACAAAGAACTAAAAGTTGCCTCTGACAATTTCAGTCCGGCCAATAAAATTGGGCAGGGTGGATTTGGTTCAGTTTATAAGGGACTGCTAAAAGATGGGAAAGTAGCTGCCATAAAAGTACTTTCAGCAGAATCAAGTCAAGGGGTAAAGGAATTTATGACAGAGATTAATGTAATCTCAGAAATAGAGCATGAAAATTTGGTTAAGCTATATGGTTGTTGTGTGGAAGGGAATCAGCGAATCTTGGTCTACAATTATGTTGAGAACAATAGCCTTGCACAAACCCTTCTAGGTTCAGGTCACAGTAATATCATTTTTGATTGGAAAACACGATCTAGGATTTGCATTGGGATTGCACGTGGACTTGCTTATCTTCATGAAGAAGTAATACCACATATTGTTCACAGAGATATAAAAGCAAGCAATATTCTCCTTGACCAAAACCTTACACCCAAGATTTCTGATTTTGGTCTTGCAAAGCTTATTCCATCATACATGACTCATGTCAGCACACGTGTGGCAGGAACAATAGGTTATTTGGCACCAGAGTATGCAATAAGGGGGCAGCTGACACGTAAAGCAGATATTTACAGCTTTGGTGTCCTTCTCGTGGAGATAGTTAGTGGAAGATGCCACACAAATTCACGATTACCAATAGGAGAGCAATATCTTTTGGAAATGACATGGGAACTTTATCAGAAAAGAGAATTGGTAGGGCTTGTAGACATATCACTAGATGGCCATTTCGATGCCGAGGAGGCATGTAAGTTTCTGAAAATTGGACTTCTTTGCACTCAGGACACGTCGAAGCTCCGGCCGACCATGTCATCTGTGGTCAAGATGCTCACAAGAGAAATGGATATTGATGAAAGTAAGATAACAAAGCCAGGCTTGATTCCAGATTTTAACGACCTTAAAATCAAAGAAAAAGGCAGTGATATTGATACCAAGGCTTCGTCATCTTTCTATAATGCATCCTCTGCCTCAGACAGCCAGAGCAATACCATGTCATATGCTGCAAGCACAACTACAACCTTCACTGCGAAATATGATCAAAGTTTGTAA 1173 0.399 MTCFPFSFGKKVRFVATHDPDIDEVLSGIQNVRIYTYKELKVASDNFSPANKIGQGGFGSVYKGLLKDGKVAAIKVLSAESSQGVKEFMTEINVISEIEHENLVKLYGCCVEGNQRILVYNYVENNSLAQTLLGSGHSNIIFDWKTRSRICIGIARGLAYLHEEVIPHIVHRDIKASNILLDQNLTPKISDFGLAKLIPSYMTHVSTRVAGTIGYLAPEYAIRGQLTRKADIYSFGVLLVEIVSGRCHTNSRLPIGEQYLLEMTWELYQKRELVGLVDISLDGHFDAEEACKFLKIGLLCTQDTSKLRPTMSSVVKMLTREMDIDESKITKPGLIPDFNDLKIKEKGSDIDTKASSSFYNASSASDSQSNTMSYAASTTTTFTAKYDQSL* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1955 390 CDD STKc_IRAK 53 320 - -
Gso8g1955 390 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 374 - -
Gso8g1955 390 PANTHER - 2 374 - -
Gso8g1955 390 ProSiteProfiles Protein kinase domain profile. 47 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1955 390 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Gso8g1955 390 Gene3D Transferase(Phosphotransferase) domain 1 123 331 - -
Gso8g1955 390 SMART serkin_6 47 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1955 390 PIRSF TyrPK_CSF1-R 44 132 - -
Gso8g1955 390 PIRSF TyrPK_CSF1-R 290 389 - -
Gso8g1955 390 PIRSF TyrPK_CSF1-R 143 250 - -
Gso8g1955 390 Gene3D Phosphorylase Kinase; domain 1 19 122 - -
Gso8g1955 390 Pfam Protein kinase domain 50 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1955 390 SUPERFAMILY Protein kinase-like (PK-like) 26 318 IPR011009 -
Gso8g1955 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1955 Gso-Chr8 19825008 19829809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1955 14 331 Receptor kinase-like Gene Family AT1G53430 52.978 1.71e-108 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso8g1955 Pkinase 7.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1955 - - gmx:100797706 765.763