Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1945 ATGGGAAACTCGCATGCTAAAAAGCGTGACACTCAATTTTCCAGAAACGTTGTTAAAGGGAGAGTTCCCTCTCCAAAAGACAAAACCTTATCATCATTACAGTCACCATCATCACCATCACAATCACCATCACCGTCGCTAGAACCACCACGAGAACCACCACCACCGGTTATGTTTTTTAATACGGGTTCGGGAAAACTATCTGCCAAAGAGAAATATGCTCTAATTCCTGATAACTTCACTACCCTTGAACAGGTTACAACTGCCTTGAGGAAGGAAGGTTTAGAATCATCAAATCTTGTCCTTGGAATTGATTTCACAAAAAGCAATGAATGGACTGGAAGTGTCTCATTCAACAATAAAAGCCTTCATGCTATTGGAAGTACCGCTAACCCCTATGAGAAAGCCATCTCTATTATTGGCAAGACTCTTGCTCCCTTTGATGATGATAACTTGATTCCATGTTTTGGCTTTGGGGATGCGACCACTCATGATCAAGAAGTGTTTAGCTTTCACAGTGATCATTCACCTTGCCATGGTTTTGAGGAAGTTTTGGCTTGCTATCAAAAAGTTGTTCCAAATTTGAGACTGTCTGGACCAACATCTTATGCTCCTGTGATTGAGGCTGCAATAGACATAGTTGAGAAAAGTCATGGCCAATTCCATGTGTTAGTTATTGTTGCAGATGGCCAGGTTACAACAAGTGCTGCATCTGAACATGGAGAACTCAGTCCACAAGAAGCAAGGACAATCAAAGCAATAGTTGATGCAAGTTCATATCCCCTTTCTATTATTCTGGTTGGAGTTGGTGATGGACCCTGGGAAGACATGAAGAAGTTTGATGACAAGATACCCGCTCGCGACTTTGACAATTTTCAGTTTGTTAACTTCACTGACATAATGACCAAGAAATCAAGCCCCTCAGAAAAAGAAACTGCTTTTGCTCTGGCTGCTCTTATGGAGATACCTTTCCAATATAAAGCAGCCATTGAACTTGAACTACTTGGTCGTGCAACAGGGAGATCAAATAAAATAGTTCCAAGACCTCCTCCAGCTCCATATTCCCGGCTTGTGCCACCAGCTCGCGTTCTGAGCAATATGCCAACTTTCATGGATGATGAGAGAAACCAAATGGCTTGTGCTATTTGTCTGACCAATAAAAAGGATTTGGCATTTGGATGTGGTCACATGACTTGTAGAGATTGTGGATCTAGGTTAACCAATTGTCCGATATGCCGTCAGAGGATCACCAATCGTCTTAGGGTGTTTTCTAGCTGA 1278 0.421 MGNSHAKKRDTQFSRNVVKGRVPSPKDKTLSSLQSPSSPSQSPSPSLEPPREPPPPVMFFNTGSGKLSAKEKYALIPDNFTTLEQVTTALRKEGLESSNLVLGIDFTKSNEWTGSVSFNNKSLHAIGSTANPYEKAISIIGKTLAPFDDDNLIPCFGFGDATTHDQEVFSFHSDHSPCHGFEEVLACYQKVVPNLRLSGPTSYAPVIEAAIDIVEKSHGQFHVLVIVADGQVTTSAASEHGELSPQEARTIKAIVDASSYPLSIILVGVGDGPWEDMKKFDDKIPARDFDNFQFVNFTDIMTKKSSPSEKETAFALAALMEIPFQYKAAIELELLGRATGRSNKIVPRPPPAPYSRLVPPARVLSNMPTFMDDERNQMACAICLTNKKDLAFGCGHMTCRDCGSRLTNCPICRQRITNRLRVFSS* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1945 425 MobiDBLite consensus disorder prediction 42 57 - -
Gso8g1945 425 SMART VWA_4 97 300 IPR002035 -
Gso8g1945 425 CDD RING-HC_RGLG_plant 380 423 IPR045317 GO:0061630|GO:0070534
Gso8g1945 425 MobiDBLite consensus disorder prediction 1 15 - -
Gso8g1945 425 SUPERFAMILY vWA-like 98 280 IPR036465 -
Gso8g1945 425 ProSiteProfiles Zinc finger RING-type profile. 380 413 IPR001841 -
Gso8g1945 425 Pfam Zinc finger, C3HC4 type (RING finger) 377 417 - -
Gso8g1945 425 SMART ring_2 380 412 IPR001841 -
Gso8g1945 425 SUPERFAMILY RING/U-box 374 419 - -
Gso8g1945 425 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RGLG4 66 423 - -
Gso8g1945 425 MobiDBLite consensus disorder prediction 27 41 - -
Gso8g1945 425 PANTHER COPINE FAMILY PROTEIN 1 66 423 - -
Gso8g1945 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 369 425 IPR013083 -
Gso8g1945 425 MobiDBLite consensus disorder prediction 1 59 - -
Gso8g1945 425 Pfam Copine 122 335 IPR010734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1945 Gso-Chr8 19582343 19589801 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1945 K16280 - gmx:100795579 815.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g1945 8 19582343 19589801 Gso8g1945 8 19582343 19589801 ECH
Gso8g1463 8 14261910 14264863 Gso8g1945 8 19582343 19589801 PCT
Gso8g1945 8 19582343 19589801 Gso8g1463 8 14261910 14264863 PCT