LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso8g1943	ATGGCAGAACCATCTCCTCCTCCGCCGCTGGCACCACCGCCACCGCCACAGTCGACTCCACCTCGTCCTCAGCCGGCCGACAGCGTCCGTGTTCGGTGTGCCGGCTGCCGCATGATCCTGACTGTGGCCCCCGGCCTCACCGAATTCGCGTGCCCTACCTGCCGAATGCCGCAGATGCTTCCACCGGAGCTCATGCCAAAGGCGGCGGTGGCCAACGTGGCGGCAGCACCGCTTCCTCCGACATCCGCTCCGCCATCGCAGCCGTCGCAAGCACCGGCGCATGGCATTGATCCCACTAAGATCCAGCTTCCCTGCGCCTCGTGCAAGGCCATCCTCAACGTCCCTCACGGCCTCCCCCGCTTCGCTTGCCCTCAGTGCGGGGTTGACCTCGCCGTCGATGTCTCCAAGGTTAAGCAGTTCTTTCCCGCGCCGCTGCTGCCAGAAGAAGTTAATGAGGTTGCTGTTGAAGTGGAGCGGGACGAAGATGAAGGTGGCATGGTTGGAGAAACATTTACAGATTATCGGCCGCCAAAAGTATCTATTGGACCTCCACACCCAGATCCTGTTGTGGAGACATCTTCTTTGTCTGCAGTGCAGCCTCCTGAGCCAACTTATGATCCAAAAATTAAAGATGATTTGGAAAATTCAAAGGCTTTGTCTTGCTTGCAAATTGAGACATTGGTCTATGCTTCTCAGAGACACCTCCAACACCTCTCAAATGGAGCTAGGGCAGGGTTTTTTATTGGAGATGGAGCTGGTGTAGGTAAAGGTCGAACTATTGCAGGGCTGATTTGGGAGAACTGGCATCACTATAGGAGGAAAGCATTGTGGATTTCTGTTGGTTCAGACTTGAAGTTTGATGCTAGAAGAGACTTGGATGATGTTGGTGCAACATGCATTGAAGTGCATGCTTTGAACAAACTGCCTTATTCTAAGCTTGATTCAAAGTCTGTTGGGGTCAGGGAGGGAGTTGTTTTTTCGACGTACAATAGCCTCATAGCATCTTCTGAGAAAGGTCGTTCTCGTCTCCAGCAGCTCATACAGTGGTGTGGACCAGGGTTTGATGGTCTTATAATTTTTGATGAGTGTCACAAAGCAAAAAATTTGGTCCCTGAATCTGGTAGTCAGCCGACACGAACTGGAGAAGCAGTGGTTGATATCCAGGATCGACTACCTGAAGCTCGTGTTGTTTATTGCTCAGCAACTGGAGCATCTGAACCTCGTAATATGGGTTATATGGTTCGACTTGGTCTTTGGGGAGATGGGACTTCATTCACTGATTTCCGGGAATTTCTAGGAGCTCTTGACAGAGGGGGTGTTGGAGCTCTTGAACTAGTTGCCATGGACATGAAAGCAAGGGGTATGTATTTATGTCGGACACTTAGCTATGAGGGTGCAGAGTTTGAAGTTATCGAAGCACCATTAGAGGATAAAATGATGGACATGTATAAAAAGGCAGCAGAATTTTGGGCTGAATTACGTGTAGAATTGCTGTCAGCCAGTGCCTTCCTAAATGACAAACCAAATTCTAGTCAACTATGGCGATTATACTGGGCCAGCCACCAACGTTTCTTTAGACACATATGTATGTCTGCTAAAGTCCCTGCTGCTGTGAGACTAGCGAAGCAAGCATTAGTTGAAGAAAAATCTGTAGTCATTGGTCTTCAGAGTACTGGAGAAGCTAGGACAGAGGAAGCTGTAACAAAATATGGTTCTGAACTTGATGACTTTGTTTCTGGACCTCGAGAATTGCTGCTTAAATTTGTGGAAGAAAATTACCCGTTACCAGAAAAACCTGAACTTCTCCCAGGAGAGGATGGGGTAAAAGAACTCCAACGGAAGAGGCATTCTGCAACTCCCGGTGTTTCAGTAAAAGGAAGGGTCAGAAAAGTAGCCAAGTGGCAGCCTCCTAGTGATGCTGAAAGTGATGAAGACTCTGAGACTGACTCTGGCATTGAATCTACTGACTCTGATGATGAGTTTCAAATATGTGAAATTTGTACTACAGAGGAGGAAAGGAAAAAATTGCTACAGTGTTCCTGCTGCAGTAAGTTAGTCCATTCCACATGCCTGATGCCACCAATTGGTGATATAGTTCCTGAAGAGTGGTCATGCCATTTGTGTAAGGAGAAAACAGATGAATATCTTCAAGCTAGACAGGCCTACATAGCTGAACTTCAAAAGAGGTATGATGCAGCCTCGGAACGCAAGACAAAAATATTAGACATAATTCGTGCTCTGGATCTTCCAAATAATCCTTTGGATGATATTGTTGACCAGCTAGGAGGCCCTGACAAAGTTGCAGAAATGACAGGAAGGAGAGGCATGCTTGTGAGGGCTTCTACTGGAAAGGGTGTTACTTATCAGGCTCGTAATACAAAAGATGTCACTATGGAAATGGTTAACATGCATGAAAAGCAGCTCTTTATGGATGGTAAAAAGTTTGTTGCTATTATCTCTGAAGCTGGATCAGCTGGTGTATCTTTGCAGGCTGATAGGCGAGCTGCAAATCAGAAAAGACGGGTTCATTTAACACTTGAACTTCCATGGAGTGCTGACCGGGCAATCCAGCAGTTTGGAAGAACTCATCGATCAAATCAAGCTTCAGCACCAGAATACAGGATACTATTTACAAATCTTGGTGGAGAACGAAGATTTGCATCAATTGTTGCCAAGAGATTAGAATCTCTTGGTGCCTTGACTCAGGGTGACCGCAGGGCTGGACCTTCGTTAAGTGCTTATAATTATGATAGTGCCTATGGAAAGAAAGCTCTGACAATTATGTACAAAGGAATAATGGAGCAGGATTCTCTGCCTGTGGTACCACCGGGATGTTCATCTCACACACCAGATACAATTCAAGATTTTATTGTGCAGGCAAAAGCTGCTCTTGTGTCTGTTGGAATAGTAAGGGACACTCTTGGTAATGGTAAATCTGGTCGTATTATTGATTCGGATATGCACGAAGTTGGACGGTTCCTCAACCGGATTTTGGGACTACCTCCTGATATTCAAAATGGGTTATTTGAGTTATTTGTGAGTATCTTGGATCTTCTTGTTCGGAATGCTCGCATTGAAGGTAACCTTGACACAGGCATTGTTGACTTGAAAGCTAATGTAATTGAACTACAAGGGACTCCAAAGACTGTTCATGTTGATCAATTGACTGGGGCCTCAACAGTTATGTTTACATTTATCTTAGATCGTGGGATCACATGGGAGTTGGCAAGTACAATGCTGAATGAAAAACAGAAGGATGGACTTGGTTCAGCCAATGATGGCTTCTATGAGTCCAAGAGGGAGTGGTTGGGAAGACGTCATTTCATTTTAGCATTTGAAAGTTCCGCTTCGGGTATGTATAAAATAGTTCGCCCCCCTGTTGGTGAATCGAACAGGGAGATGCCTCTGTCTGAATTAAAAAGTAAATATAGAAAAATTTCATCTTTAGAAAAGGCTCAGTCTGGTTGGGAAGAAGAATATGAAGTTTCATCTAAACAGTGCATGCATGGTCCCAATTGTAAGATTGGCAACTTTTGTACAGTTGGTAGAAGACTACAGGAAGTAAATGTCTTGGGTGGCCTCATCCTTCCTGTTTGGGGAGCCGTAGAAAAGGCTCTCTCAAAGCAGGCCCGCCTAAGCCACAGGAGGCTACGTGTTGTACGCATTGAAACTACTGTGGATACGCAACGTATTGTTGGGCTTCTTGTTCCTAATGCAGCTGTGGAAACTGTGCTTCAAGGTTTAGCATGGGTTCAAGAAATTGATGATTGA	3771	0.4585	MAEPSPPPPLAPPPPPQSTPPRPQPADSVRVRCAGCRMILTVAPGLTEFACPTCRMPQMLPPELMPKAAVANVAAAPLPPTSAPPSQPSQAPAHGIDPTKIQLPCASCKAILNVPHGLPRFACPQCGVDLAVDVSKVKQFFPAPLLPEEVNEVAVEVERDEDEGGMVGETFTDYRPPKVSIGPPHPDPVVETSSLSAVQPPEPTYDPKIKDDLENSKALSCLQIETLVYASQRHLQHLSNGARAGFFIGDGAGVGKGRTIAGLIWENWHHYRRKALWISVGSDLKFDARRDLDDVGATCIEVHALNKLPYSKLDSKSVGVREGVVFSTYNSLIASSEKGRSRLQQLIQWCGPGFDGLIIFDECHKAKNLVPESGSQPTRTGEAVVDIQDRLPEARVVYCSATGASEPRNMGYMVRLGLWGDGTSFTDFREFLGALDRGGVGALELVAMDMKARGMYLCRTLSYEGAEFEVIEAPLEDKMMDMYKKAAEFWAELRVELLSASAFLNDKPNSSQLWRLYWASHQRFFRHICMSAKVPAAVRLAKQALVEEKSVVIGLQSTGEARTEEAVTKYGSELDDFVSGPRELLLKFVEENYPLPEKPELLPGEDGVKELQRKRHSATPGVSVKGRVRKVAKWQPPSDAESDEDSETDSGIESTDSDDEFQICEICTTEEERKKLLQCSCCSKLVHSTCLMPPIGDIVPEEWSCHLCKEKTDEYLQARQAYIAELQKRYDAASERKTKILDIIRALDLPNNPLDDIVDQLGGPDKVAEMTGRRGMLVRASTGKGVTYQARNTKDVTMEMVNMHEKQLFMDGKKFVAIISEAGSAGVSLQADRRAANQKRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRILFTNLGGERRFASIVAKRLESLGALTQGDRRAGPSLSAYNYDSAYGKKALTIMYKGIMEQDSLPVVPPGCSSHTPDTIQDFIVQAKAALVSVGIVRDTLGNGKSGRIIDSDMHEVGRFLNRILGLPPDIQNGLFELFVSILDLLVRNARIEGNLDTGIVDLKANVIELQGTPKTVHVDQLTGASTVMFTFILDRGITWELASTMLNEKQKDGLGSANDGFYESKREWLGRRHFILAFESSASGMYKIVRPPVGESNREMPLSELKSKYRKISSLEKAQSGWEEEYEVSSKQCMHGPNCKIGNFCTVGRRLQEVNVLGGLILPVWGAVEKALSKQARLSHRRLRVVRIETTVDTQRIVGLLVPNAAVETVLQGLAWVQEIDD*	1257

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso8g1943	1256	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	647	735	IPR013083	-
	Gso8g1943	1256	MobiDBLite	consensus disorder prediction	641	656	-	-
	Gso8g1943	1256	Pfam	P-loop containing NTP hydrolase pore-1	184	484	IPR039187	-
	Gso8g1943	1256	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	807	912	IPR027417	-
	Gso8g1943	1256	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	192	427	IPR027417	-
	Gso8g1943	1256	MobiDBLite	consensus disorder prediction	628	656	-	-
	Gso8g1943	1256	MobiDBLite	consensus disorder prediction	1	28	-	-
	Gso8g1943	1256	MobiDBLite	consensus disorder prediction	1	23	-	-
	Gso8g1943	1256	PANTHER	STRAWBERRY NOTCH-RELATED	26	142	IPR026741	GO:0006355
	Gso8g1943	1256	PANTHER	STRAWBERRY NOTCH-RELATED	143	1256	IPR026741	GO:0006355
	Gso8g1943	1256	SUPERFAMILY	FYVE/PHD zinc finger	655	714	IPR011011	-
	Gso8g1943	1256	Gene3D	-	217	414	IPR027417	-
	Gso8g1943	1256	Pfam	C-terminal domain on Strawberry notch homologue	752	1035	IPR026937	-
	Gso8g1943	1256	ProSitePatterns	Zinc finger PHD-type signature.	664	708	IPR019786	-
	Gso8g1943	1256	MobiDBLite	consensus disorder prediction	76	96	-	-
	Gso8g1943	1256	ProSiteProfiles	Zinc finger PHD-type profile.	661	711	IPR019787	-
	Gso8g1943	1256	SMART	PHD_3	663	709	IPR001965	-
	Gso8g1943	1256	PANTHER	OS08G0223700 PROTEIN	143	1256	-	-
	Gso8g1943	1256	PANTHER	OS08G0223700 PROTEIN	26	142	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso8g1943	Gso-Chr8	19476162	19550747	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso8g1943	-		-	gmx:100804594	2402.86

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso8g1943	8	19476162	19550747	Gso8g1943	8	19476162	19550747	ECH