Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1937 ATGAATTATAGTTCAAAAAAGGCTCTCAATAAAGATCAAGTTTATGCAAATTCATCAAATAATTTAGAAAATCATGTCAAAAAGGTAAAGCAAGATACAAATGATGTCTCCACAATTGATAATACAACTAGTGGAGCAGGAGACATAGACCAAGTTCTTAAAAATAATGCAAAAGTGACAAGTAAACCAACATCTAAACCTTACAAAGTAGAAAATTCTCTACACATTTCTGATTTTTCCACTACTCAACACCCAAGTCGAAGTGCAAGAATGCCTTCAAATTCTAACCCTTCAACCACATCATCAAGAGTAGTAGCAGAAACTACAAGAGAATTTTCTATAATTACAAAAAGCACCAATCAAGGTCAGAGAAGTGGTGTTAGTTCTCGTAATGATAGTTTAGAGAGCACTAGTGGTGCACATATTAAGCCACATACAGGAGGTGATGTGAGGTGGGATGCAATTAACATGGTTTCTAGAGGTAATGGTCTTAATCTTAGTCATTTCAAGCTTCTACAGCGTGTTGGTTATGGAGATATTGGTAGTGTGTACCTTGTGGAACTTAAAGGAAGTAAGGCATTCTTTGCCATGAAAGTAATGGATAAAGCATCACTTGCAAGTAAAAAAAAGCTTTTAAGATCACAAACAGAAAGAGAGATTCTTGGACTTCTTGACCATCCATTTTTACCAACTTTATATTCTTATTTTGAGACTGATAAATACTATTGTTTGGTCATGGAATTTTGTAATAGTGGCAGTCTACATTCTCTTCGATTAAAGCAACCCAACAAGCATTTCACTGAAGAAGCTACACGGTTTTATTGTTCAGAGATTTTGTTAGCTTTAGAATACTTGCACATGCTAGGCATTGTGTATAGAGACTTAAAACCAGAGAATGTTCTAGTTCGAGATGAAGGTCACATAATGTTATCAGATTTTGACTTATCCCTTCGTTGCTCTGTTAATCCTACACTTGTGAAGTCATCATCTGCACATGAAAGTAATAATGGTCCATCTGGGAGCATTTTGGATGATGAGCAAGTAATACATGGTTGCATACAACCTTCAAGTTTCTTTCCACGCATTTTACCTTCAAAAAAGAATAGAAAGTTAAAGTCTGATTTTGGCCTCATGGTTGGAGGATGCCTGCCAGAACTAATGGCAGAGCCTACAAATGTGAGGTCAATGTCCTTTGTAGGAACACATGAGTATCTTGCACCTGAGATTATTCGTGGCGAAGGACATGGTAGTGCAGTGGATTGGTGGACATTTGGAATATTCTTGTATGAACTTTTGCATGGGATAACACCCTTTAAAGGTGAAGGAAATAAAGCCACACTCTTTAATGTTGTAGGTCAGCCCTTAAGGTTCCCAAAAAAACCTCATGTTAGTAATGTTGCAAGAGACCTTATAAAAGGATTGTTGGTGAAAGAGCCCCAGAAACGATTTGCTTATAAGAGAGGTGCCACAGAAATAAAACAACACCCTTTTTTTAACGGAGTAAATTGGGCTCTAGTTAGAAGTGCTACACCTCCTATTATACCAAAGCCTTTAGATTTTTCTAAGTATGCTAACAAATCAAACATTCCCCCAATAGACAAGAAGATTGCAGATATTGTTGCAAGCGATAAAAGTAGGCATACACAACCTAATTCTTCTTATGAAGATTTTGAGTATTTTTAG 1683 0.3636 MNYSSKKALNKDQVYANSSNNLENHVKKVKQDTNDVSTIDNTTSGAGDIDQVLKNNAKVTSKPTSKPYKVENSLHISDFSTTQHPSRSARMPSNSNPSTTSSRVVAETTREFSIITKSTNQGQRSGVSSRNDSLESTSGAHIKPHTGGDVRWDAINMVSRGNGLNLSHFKLLQRVGYGDIGSVYLVELKGSKAFFAMKVMDKASLASKKKLLRSQTEREILGLLDHPFLPTLYSYFETDKYYCLVMEFCNSGSLHSLRLKQPNKHFTEEATRFYCSEILLALEYLHMLGIVYRDLKPENVLVRDEGHIMLSDFDLSLRCSVNPTLVKSSSAHESNNGPSGSILDDEQVIHGCIQPSSFFPRILPSKKNRKLKSDFGLMVGGCLPELMAEPTNVRSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGIFLYELLHGITPFKGEGNKATLFNVVGQPLRFPKKPHVSNVARDLIKGLLVKEPQKRFAYKRGATEIKQHPFFNGVNWALVRSATPPIIPKPLDFSKYANKSNIPPIDKKIADIVASDKSRHTQPNSSYEDFEYF* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1937 560 Pfam Protein kinase domain 170 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1937 560 Pfam Protein kinase domain 389 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1937 560 ProSiteProfiles Protein kinase domain profile. 169 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1937 560 PANTHER FLIPPASE KINASE 1-RELATED 12 560 - -
Gso8g1937 560 MobiDBLite consensus disorder prediction 80 140 - -
Gso8g1937 560 MobiDBLite consensus disorder prediction 80 145 - -
Gso8g1937 560 CDD STKc_phototropin_like 167 519 - -
Gso8g1937 560 ProSiteProfiles AGC-kinase C-terminal domain profile. 499 560 IPR000961 GO:0004674|GO:0005524|GO:0006468
Gso8g1937 560 PANTHER SERINE/THREONINE-PROTEIN KINASE AGC1-5 12 560 - -
Gso8g1937 560 Gene3D Transferase(Phosphotransferase) domain 1 373 516 - -
Gso8g1937 560 SMART serkin_6 169 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1937 560 Gene3D Phosphorylase Kinase; domain 1 167 252 - -
Gso8g1937 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 290 302 IPR008271 GO:0004672|GO:0006468
Gso8g1937 560 MobiDBLite consensus disorder prediction 1 48 - -
Gso8g1937 560 Gene3D Transferase(Phosphotransferase) domain 1 253 322 - -
Gso8g1937 560 MobiDBLite consensus disorder prediction 1 24 - -
Gso8g1937 560 SUPERFAMILY Protein kinase-like (PK-like) 166 527 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1937 Gso-Chr8 19325947 19328600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1937 49 526 AGC Kinase Gene Family AT1G79250 66.667 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Gso8g1937 Pkinase 4.1e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1937 - - gmx:100802478 1107.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g1937 8 19325947 19328600 Gso8g1937 8 19325947 19328600 ECH
Gso8g1329 8 12510803 12515206 Gso8g1937 8 19325947 19328600 PCT
Gso15g2194 15 50457883 50461934 Gso8g1937 8 19325947 19328600 PCT