Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1936 ATGGAAAACCACATCTACGCCTCCTCTTACAGCCCTTCCACCAACTACAGATCCTTCCGTGACCATCCCGCCGCCGACGCCATGTTCCTCTCCCACCACCTCCACCACCGTACCGACGCCTCCGACGCCGCCGCCTTTCGCTTCCCTTCCTCCGCCCTCTCCGCCGTCGAAGCCGCCGACATTGCCCCTCCCGGCGTCACCTCCCGAATCGCCTCCTCCGCCGCCTCCGCGAATTTCCTCTCCTCCTGGCCCCCTGTCGCCGCCGCCGCCGCCGTGCCTTCCGCCCTTGACCTCAAACGCTCCTCCGACGCTCTCTACCATCCAACAATTTTGGGTACAATTGGGCAAAGTGAAGCTTGGTATTCTACAAACCCACTGGCCAAGCGCCCTAGATATGAAAGTGCTTCCAATATGACTATATATCCACAGAGGCCAGGAGAGAAGGATTGTGCCCACTATATGCTCACAAGAACCTGTAAGTTTGGAGACAGCTGCAAGTTTGACCATCCTTTTTGGGTTCCAGAGGGTGGAATCCCGGATTGGAAAGAGGTTCCAATTGTTACAAGTGAAACTCCACCTGAGAGACCAGGGGAACCAGATTGTCCATACTTTCTGAAAACTCAAAGATGCAAGTTTGGTTCAAAGTGCAAATTTAATCATCCCAAAGTTTCCTCGGAAAATGCTGATGTTTCTTCTGGCTTACCTGAGAGGCCATCGGAGCCCCCTTGTGCGTTCTACATGAAAACTGGAAAATGTAGATATGGTGCTGCTTGTAAATTCCATCACCCCAAGGATATCCAGATTCAGTTGTCTAACGACTCAAGTCAAACTGTTGCACAGACTCAAACAAATTCTATAATGGGTTGGGCAACAGGAGATACACAGCCAATTCAATCTCTTATATCTCCATCGTTGCAAAATAGCAAAGGGCTTCCAGTGAGACTGGGGGAAGTGGATTGTCCATTCTACATGAAAACTGGGAGTTGCAAGTATGGTGTCACTTGCCGCTACAATCATCCTGACAGGAATGCAATCAATCCACCCATTGCTGGATTAGGCGCCTCTATTTTTCCATCCTCGGCTGCTAATCTGAATATCGGACTTCTTAATCCAGCTGTTTCTGTCTATCAAGCTTTTGAACCAAGGCTGTCAAATCCAATGTCTCAGGTGGGAATTGCAGACACTATCTATCCTCAGCGACCTGGACAGATTGAATGTGATTTTTATATGAAAACTGGCGAGTGTAAATTTGGGGAAAGATGCAAGTATCATCACCCAATTGACCGCTCAGCACCATCACTGTCAAAGCAGGCTACAGTGAAACTCACTCCTGCAGGATTACCAAGAAGAGAGGGTGCTGTTATCTGCCCATATTATTTGAAAACTGGAACATGCAAGTTTGGTGCAACCTGCAAGTTTGACCACCCACCACCTGGAGAAGTTATGGAGATGGCAAAATCACAAGGAACATCGGCCAATGGAGGGGAAGCAGAAGGCGATGAAATCGAGACTTCTGCTCAACTTTGA 1527 0.4918 MENHIYASSYSPSTNYRSFRDHPAADAMFLSHHLHHRTDASDAAAFRFPSSALSAVEAADIAPPGVTSRIASSAASANFLSSWPPVAAAAAVPSALDLKRSSDALYHPTILGTIGQSEAWYSTNPLAKRPRYESASNMTIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPFWVPEGGIPDWKEVPIVTSETPPERPGEPDCPYFLKTQRCKFGSKCKFNHPKVSSENADVSSGLPERPSEPPCAFYMKTGKCRYGAACKFHHPKDIQIQLSNDSSQTVAQTQTNSIMGWATGDTQPIQSLISPSLQNSKGLPVRLGEVDCPFYMKTGSCKYGVTCRYNHPDRNAINPPIAGLGASIFPSSAANLNIGLLNPAVSVYQAFEPRLSNPMSQVGIADTIYPQRPGQIECDFYMKTGECKFGERCKYHHPIDRSAPSLSKQATVKLTPAGLPRREGAVICPYYLKTGTCKFGATCKFDHPPPGEVMEMAKSQGTSANGGEAEGDEIETSAQL* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1936 508 ProSiteProfiles Zinc finger C3H1-type profile. 314 342 IPR000571 GO:0046872
Gso8g1936 508 SUPERFAMILY CCCH zinc finger 318 341 IPR036855 GO:0046872
Gso8g1936 508 MobiDBLite consensus disorder prediction 485 508 - -
Gso8g1936 508 SUPERFAMILY CCCH zinc finger 144 171 IPR036855 GO:0046872
Gso8g1936 508 SUPERFAMILY CCCH zinc finger 454 477 IPR036855 GO:0046872
Gso8g1936 508 Gene3D - 398 492 - -
Gso8g1936 508 Gene3D - 234 348 - -
Gso8g1936 508 SMART c3hfinal6 195 222 IPR000571 GO:0046872
Gso8g1936 508 SMART c3hfinal6 400 427 IPR000571 GO:0046872
Gso8g1936 508 SMART c3hfinal6 237 264 IPR000571 GO:0046872
Gso8g1936 508 SMART c3hfinal6 450 477 IPR000571 GO:0046872
Gso8g1936 508 SMART c3hfinal6 314 341 IPR000571 GO:0046872
Gso8g1936 508 SMART c3hfinal6 144 171 IPR000571 GO:0046872
Gso8g1936 508 ProSiteProfiles Zinc finger C3H1-type profile. 195 223 IPR000571 GO:0046872
Gso8g1936 508 PANTHER CCCH ZINC FINGER/TIS11-RELATED 92 491 IPR045877 GO:0003729
Gso8g1936 508 SUPERFAMILY CCCH zinc finger 402 428 IPR036855 GO:0046872
Gso8g1936 508 ProSiteProfiles Zinc finger C3H1-type profile. 400 428 IPR000571 GO:0046872
Gso8g1936 508 ProSiteProfiles Zinc finger C3H1-type profile. 144 172 IPR000571 GO:0046872
Gso8g1936 508 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 92 491 - -
Gso8g1936 508 SUPERFAMILY CCCH zinc finger 200 221 IPR036855 GO:0046872
Gso8g1936 508 ProSiteProfiles Zinc finger C3H1-type profile. 450 478 IPR000571 GO:0046872
Gso8g1936 508 ProSiteProfiles Zinc finger C3H1-type profile. 237 265 IPR000571 GO:0046872
Gso8g1936 508 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 146 171 IPR000571 GO:0046872
Gso8g1936 508 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 240 264 IPR000571 GO:0046872
Gso8g1936 508 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 454 477 IPR000571 GO:0046872
Gso8g1936 508 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 403 426 IPR000571 GO:0046872
Gso8g1936 508 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 317 340 IPR000571 GO:0046872
Gso8g1936 508 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 197 222 IPR000571 GO:0046872
Gso8g1936 508 SUPERFAMILY CCCH zinc finger 241 265 IPR036855 GO:0046872
Gso8g1936 508 Gene3D - 101 181 - -
Gso8g1936 508 Gene3D - 182 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1936 Gso-Chr8 19317442 19324647 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1936 299 489 C2H2 Transcription Factor Family AT3G02830 34.375 2.19e-28 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso8g1936 zf-CCCH 1.6e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1936 - - gmx:100801417 1036.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g1936 8 19317442 19324647 Gso8g1936 8 19317442 19324647 ECH
Gso15g1824 15 36760981 36777499 Gso8g1936 8 19317442 19324647 GST