Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1921 ATGAACCCGCCAACACTAGTGAAGCGCACTCAGAACATCAATGCCAGAGAAGCTGCACTCAGCATCGGCGACCATGCCTCCTGGCACACCAAGTACAAGGATTCCGCTTACATCTTCGTCGGTGGCATCCCCTTCGATCTCACCGAGGGTGACCTCCTCCCCGTTTTTGCTCAATACGGAGAGGTTGTTGATGTTAACCTAGTTAGGGACAAAGGTACCGGAAAATCCAAGGATTTTGCGTTCCTTGCGTATGAGGATCAGAGGAGCGCGGATCTTGCTGTGGATAATTTGAACGGGGCACAGGTTTTGGGGAGAATTATTAAGGTGGACCATGTTGATAAGTATAAGAAGAAGGAGGAGGAGGATGAAGAGACAGAGCGGCTGAAGAGGGAGGCACGTGGCGTTTGCCGTGCTTTCCAAAGAGGTGAATGCACTCGGGGAGCTAGCTGCAAGTTTTCTCATGATGAGCAAGCATGCCTTATTCATATACACGCGGTTCTGCCATGGATGCGTCACCCTGTCGACATCACTCGCTGTCCAGAACTCCCCGTCTGTAGTGTTCCTTTGATGAAACGCAGGTTACAGTCGGTACTGGAGGAGAACATGGGAATTTCCAAGCTGTTCCCTGTTCAGGTCGCACTTTGGCAAGAAACGGTTGGACCGGGTGACTTTGAGCGAGACCTTTGCATAAACTCGCCCACCGGAAGTGGCAAAACCTTGGCCTATGCTCTTCCCATCGTTCAAAACTTGTTCACCAACCCCGGTGGCCGCCTCCGTGCTTTGGTTGTAGTTCCCACCCGCGACCTTGCTTTGCAGGTTAAGCGCATCTTCGACGCCCTTGCATCGCCGCTGGGTCTCCGTATTGGCTTGGCTGCTGGTCAATCTTCGCTTCGTCACGAGCTTTCTAGCCTCATTTATCTACCTGGAGAAGACGATGGTCCAGATCCTGGGTTTTTGTCTCCGTTGTGGTTCCAAAGCAAGGTCGACATATTGGTAGCGACCCCTGGAAGGCTAGTGGACCATGTCAACAAGTTGTCATTGAAGCATCTTCGTTATCTCGTGGTTGACGAAGCAGATCGATTGCTACGTGAGGACTACCAGTCCTGGTTACCTACTGTGCTTAAATTAACTCAGTCTAGGCTGGCAAAGATAGTTTTATCTGCTACGTTAACTCGGGACCCAGGAAGACTTGCTCAACTTAATTTGCATCACCCTTTATTCCTGAGTGCTGGGAAAATGCGTTATCGGCTCCCAGAATATTTGGAATGTTACAAACTGATCTGTGAAAGAAAGGTCAAACCCTTGTATTTGGTTGCCCTTTTGAAATCCCTAGGAGAAGAAAAATGCATAGTTTTTACAAGATCTGTGGAATCAACACATCATCTCTGCAAATTGCTAAATTGTTTTGGTGATCTGAAAATTGGTATCAAGGAGTTTTCTGGTCTAAAACATCAACGGGTAAGAAGCAAGACAGTGGGTGAATTTCGGAGAGGGGAGTTTCAAGTGCTTGTATCTTCTGATGCAATGACTCGTGGAATGGATGTTGAAGGGGTAAGAAATGTCATTAATTATGACATGCCCAAATACACAAAGACGTATGTTCATCGAGCTGGTAGAACTGCAAGAGCTGGCCAGACTGGGCGTTGCTTCACATTGATGTCAAAAGATGAGGTTGGAGGATTTAAGAAGTTGATGAAAAAGGCTGAGGCTAGTGATTGTCTTGAGTATACTGTTCCATCCAGTTTGATTGAAGCGCTTCATAGTACCTACCAATCAGCACTGACAAAATTGAAGGAGAAAATTCTGGAGTCCCGGAGAAAACCAAGGATAAGTCTTGTCAATCGATCAAAGTGA 1854 0.4741 MNPPTLVKRTQNINAREAALSIGDHASWHTKYKDSAYIFVGGIPFDLTEGDLLPVFAQYGEVVDVNLVRDKGTGKSKDFAFLAYEDQRSADLAVDNLNGAQVLGRIIKVDHVDKYKKKEEEDEETERLKREARGVCRAFQRGECTRGASCKFSHDEQACLIHIHAVLPWMRHPVDITRCPELPVCSVPLMKRRLQSVLEENMGISKLFPVQVALWQETVGPGDFERDLCINSPTGSGKTLAYALPIVQNLFTNPGGRLRALVVVPTRDLALQVKRIFDALASPLGLRIGLAAGQSSLRHELSSLIYLPGEDDGPDPGFLSPLWFQSKVDILVATPGRLVDHVNKLSLKHLRYLVVDEADRLLREDYQSWLPTVLKLTQSRLAKIVLSATLTRDPGRLAQLNLHHPLFLSAGKMRYRLPEYLECYKLICERKVKPLYLVALLKSLGEEKCIVFTRSVESTHHLCKLLNCFGDLKIGIKEFSGLKHQRVRSKTVGEFRRGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYTKTYVHRAGRTARAGQTGRCFTLMSKDEVGGFKKLMKKAEASDCLEYTVPSSLIEALHSTYQSALTKLKEKILESRRKPRISLVNRSK* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1921 617 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 258 564 IPR027417 -
Gso8g1921 617 SMART ultradead3 203 420 IPR014001 -
Gso8g1921 617 SMART c3hfinal6 132 156 IPR000571 GO:0046872
Gso8g1921 617 Gene3D - 131 187 - -
Gso8g1921 617 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 219 408 IPR014001 -
Gso8g1921 617 Pfam DEAD/DEAH box helicase 211 394 IPR011545 GO:0003676|GO:0005524
Gso8g1921 617 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 354 362 IPR000629 -
Gso8g1921 617 SMART helicmild6 460 544 IPR001650 -
Gso8g1921 617 PANTHER ATP-DEPENDENT RNA HELICASE DDX51 122 589 - -
Gso8g1921 617 SUPERFAMILY RNA-binding domain, RBD 27 115 IPR035979 GO:0003676
Gso8g1921 617 SMART rrm1_1 37 110 IPR000504 GO:0003723
Gso8g1921 617 CDD SF2_C_DEAD 421 552 - -
Gso8g1921 617 Gene3D - 425 614 IPR027417 -
Gso8g1921 617 CDD RRM_ist3_like 27 113 IPR045844 GO:0000398|GO:0003723
Gso8g1921 617 Gene3D - 188 416 IPR027417 -
Gso8g1921 617 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 155 IPR000571 GO:0046872
Gso8g1921 617 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 107 IPR000504 GO:0003723
Gso8g1921 617 Gene3D - 26 130 IPR012677 -
Gso8g1921 617 Pfam Helicase conserved C-terminal domain 433 544 IPR001650 -
Gso8g1921 617 PANTHER RNA HELICASE 122 589 - -
Gso8g1921 617 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 436 586 IPR001650 -
Gso8g1921 617 CDD DEADc_DDX51 190 409 - -
Gso8g1921 617 SUPERFAMILY CCCH zinc finger 133 155 IPR036855 GO:0046872
Gso8g1921 617 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Gso8g1921 617 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1921 Gso-Chr8 19045249 19053296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1921 227 557 Eukaryotic Initiation Factors Gene Family AT1G72730 25.526 4.12e-30 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1921 K14807 - gmx:100789424 1221.45