LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso8g1900	ATGTTGGAACTACCATTCAATATGGCACTTCGGTTCCCCAAGTTGGATTTCAAGTCTTTTCCCTTTACTGAGAACCTCAACCCTGAATTGCTAGGTCACGTAGTTGCTCTTGTTGCCGTTGGCTTTACAGCTGCTTATATTTACTATCGCGCAAAACACCCCAAAGGAAGCTTGGACCCCAAAAATTTCAAGGAATTTAAACTCATAAAGAAGACTCAGCTCAGCCATAACGTTGCAAGATTCAAATTTGCCCTTCCTACTCCTTCTTCGGTATTGGGCCTTCCTGTTGGAAAAAACATACTTGCTAGGGGAAAAGATAGCCAAGGAGAGGAAGTTATGAGATCATATACTCCAATCACGTTGGATTCAAATATTGGCTACTTCGAGTTGGTTGTGAAGATGTACCCGAATGGAAAGATGTCCCACCATTTTAGACAAATGAAGGAAGGTGATTACTTGGCCGTGAGGGGCCCCAAGGGACGTTTCAGTTACAAACCTGGCCAAGTTAGGGCATTTGGAATGATTGCTGGGGGCTCAGGCATAACTCCAATGTTTCAGCTCATAAGAGCCATTCTTGAAAACCCTAAGGACAAAACAAAGGTGCACCTTGTTTACGCCAATGTAACAGTGGACGACATTCTGTTAAAGGAAGAACTAGATAACTTTGCAAACAAATTTGCTCAAAGATTTGAAGTCTACCATGTTCTTAATAAGCCTCCTGAACAATGGAATGGTGGCATTGGATTTATATCGAAGGAGATTATTAAATCACATTGTCCTGAACCAGCCCAAGATATTCAGATACTTAGGTGTGGTCCACCACCTATGAATAAAGCCATGGCTACTCATCTTGACGCACTTGGCTACACATCTAACATGCAGTTCGAGTTCTAA	894	0.4228	MLELPFNMALRFPKLDFKSFPFTENLNPELLGHVVALVAVGFTAAYIYYRAKHPKGSLDPKNFKEFKLIKKTQLSHNVARFKFALPTPSSVLGLPVGKNILARGKDSQGEEVMRSYTPITLDSNIGYFELVVKMYPNGKMSHHFRQMKEGDYLAVRGPKGRFSYKPGQVRAFGMIAGGSGITPMFQLIRAILENPKDKTKVHLVYANVTVDDILLKEELDNFANKFAQRFEVYHVLNKPPEQWNGGIGFISKEIIKSHCPEPAQDIQILRCGPPPMNKAMATHLDALGYTSNMQFEF*	298

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso8g1900	297	Pfam	Oxidoreductase FAD-binding domain	66	164	IPR008333	-
	Gso8g1900	297	SUPERFAMILY	Ferredoxin reductase-like, C-terminal NADP-linked domain	153	292	IPR039261	-
	Gso8g1900	297	PANTHER	NADH-CYTOCHROME B5 REDUCTASE	1	297	-	-
	Gso8g1900	297	SUPERFAMILY	Riboflavin synthase domain-like	55	166	IPR017938	-
	Gso8g1900	297	PRINTS	Flavoprotein pyridine nucleotide cytochrome reductase signature	173	192	IPR001709	GO:0016491
	Gso8g1900	297	PRINTS	Flavoprotein pyridine nucleotide cytochrome reductase signature	211	222	IPR001709	GO:0016491
	Gso8g1900	297	PRINTS	Flavoprotein pyridine nucleotide cytochrome reductase signature	267	275	IPR001709	GO:0016491
	Gso8g1900	297	Gene3D	Translation factors	56	154	-	-
	Gso8g1900	297	PRINTS	Cytochrome B5 reductase signature	92	103	-	-
	Gso8g1900	297	PRINTS	Cytochrome B5 reductase signature	114	121	-	-
	Gso8g1900	297	PRINTS	Cytochrome B5 reductase signature	150	164	-	-
	Gso8g1900	297	PRINTS	Cytochrome B5 reductase signature	173	192	-	-
	Gso8g1900	297	PRINTS	Cytochrome B5 reductase signature	211	222	-	-
	Gso8g1900	297	PRINTS	Cytochrome B5 reductase signature	267	275	-	-
	Gso8g1900	297	CDD	cyt_b5_reduct_like	66	297	-	-
	Gso8g1900	297	ProSiteProfiles	Ferredoxin reductase-type FAD binding domain profile.	61	165	IPR017927	GO:0016491
	Gso8g1900	297	PANTHER	NADH-CYTOCHROME B5 REDUCTASE	1	297	IPR001834	GO:0016491
	Gso8g1900	297	Pfam	Oxidoreductase NAD-binding domain	174	280	IPR001433	GO:0016491
	Gso8g1900	297	Gene3D	-	155	297	IPR039261	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso8g1900	Gso-Chr8	18683847	18689844	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso8g1900	46	297	NADPH P450 reductases	AT5G17770	67.857	1.96e-136	385

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso8g1900	K00326		-	gmx:100784114	601.282