Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1896 ATGAAGAGGTCTCCAGCATCTTCTTGTTCATCATCCACTTCCTCTGTTGGGTTTGAAGTTCATCATCCCATTGAAAAAAGAAGGCCTAAGCATCCAAGGAGGAATAATTTGAAGTCACAAAAATGCAAGCAGAACCAAACCACCACTGGTGGCAGAAGAAGCTCTATCTATAGAGGAGTTACAAGGCATAGGTGGACAGGGAGGTTTGAAGCTCACCTATGGGATAAGAGCTCTTGGAACAACATTCAGAGCAAGAAGGGTAAACAAGTTTATTTGGGGGCATATGATACTGAAGAATCTGCAGCACGTACCTATGACCTTGCAGCCCTTAAGTACTGGGGAAAAGATGCCACCCTGAATTTCCCGATAGAAACTTATACCAAGGACCTCGAGGAAATGGACAAGGTTTCAAGAGAAGAATATTTAGCTTCTTTGCGGCGCCAAAGCAGTGGCTTTTCTAGAGGCATCTCTAAGTACCGTGGGGTTGCTAGGCATCATCATAATGGTCGCTGGGAAGCTCGCATTGGAAGAGTATGTGGAAACAAGTACCTCTACTTGGGAACATATAAAACTCAAGAGGAGGCAGCAGTGGCATATGACATGGCAGCAATTGAGTACCGTGGAGTCAATGCAGTGACCAATTTTGACATAAGCAACTACATGGACAAAATAAAGAAGAAAAATGACCAAACCCTACAACAACAACAAACAGAAGTACAAACAGAAACAGTTCCTAACTCCTCTGACTCTGAAGAAGCAGAAGTAGAACAACAACACACAACAACAATAACTACACCACCCCCATCTGAAAATCTGCACATGCTACCACAGGAACACCAAGTTCAATACACCCACCATGTCTCTCCAAGGGATGAAGAATCATCATCACTGGTCACAATTATGGAGCATGTGCTTGAACAGGATCTGCCATGGAGCTTCATGTACACTGGCTTGTCTCAGTTTCAAGATCCAAACTTGGCTTTCAGCAAAGGTGATGATGACTTGGCAGGCATGTTTGATGGTGCAGGGTTTGAGGAAGACATTGATTTTCTGTTCAGCACACAACCTGGTGATCATGAGACTGAGAGTGATGTCAACAACATGAGTGCAGTTTTGGATAGTGTTGAGTGTGGAGACACAAATGGGGCTGGTGGAAGAAGCATGGTGTATCATCATGTGGATAATAATAATAAGCAGAAGAAGATGATGCTTTCATTTGCTTCTTCTTCTTCACCATCATCTACAACAACTACAGTTTCTTGTGACTATGCTCTAGATCTATGA 1284 0.4322 MKRSPASSCSSSTSSVGFEVHHPIEKRRPKHPRRNNLKSQKCKQNQTTTGGRRSSIYRGVTRHRWTGRFEAHLWDKSSWNNIQSKKGKQVYLGAYDTEESAARTYDLAALKYWGKDATLNFPIETYTKDLEEMDKVSREEYLASLRRQSSGFSRGISKYRGVARHHHNGRWEARIGRVCGNKYLYLGTYKTQEEAAVAYDMAAIEYRGVNAVTNFDISNYMDKIKKKNDQTLQQQQTEVQTETVPNSSDSEEAEVEQQHTTTITTPPPSENLHMLPQEHQVQYTHHVSPRDEESSSLVTIMEHVLEQDLPWSFMYTGLSQFQDPNLAFSKGDDDLAGMFDGAGFEEDIDFLFSTQPGDHETESDVNNMSAVLDSVECGDTNGAGGRSMVYHHVDNNNKQKKMMLSFASSSSPSSTTTTVSCDYALDL* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1896 427 MobiDBLite consensus disorder prediction 228 253 - -
Gso8g1896 427 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Gso8g1896 427 PRINTS Ethylene responsive element binding protein signature 198 218 IPR001471 GO:0003700|GO:0006355
Gso8g1896 427 SUPERFAMILY DNA-binding domain 157 218 IPR016177 GO:0003677
Gso8g1896 427 ProSiteProfiles AP2/ERF domain profile. 56 122 IPR001471 GO:0003700|GO:0006355
Gso8g1896 427 SUPERFAMILY DNA-binding domain 55 124 IPR016177 GO:0003677
Gso8g1896 427 MobiDBLite consensus disorder prediction 1 18 - -
Gso8g1896 427 MobiDBLite consensus disorder prediction 230 253 - -
Gso8g1896 427 CDD AP2 157 218 IPR001471 GO:0003700|GO:0006355
Gso8g1896 427 Gene3D AP2/ERF domain 157 218 IPR036955 GO:0003700|GO:0006355
Gso8g1896 427 Gene3D AP2/ERF domain 56 124 IPR036955 GO:0003700|GO:0006355
Gso8g1896 427 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 416 - -
Gso8g1896 427 SMART rav1_2 56 128 IPR001471 GO:0003700|GO:0006355
Gso8g1896 427 SMART rav1_2 158 222 IPR001471 GO:0003700|GO:0006355
Gso8g1896 427 MobiDBLite consensus disorder prediction 39 54 - -
Gso8g1896 427 MobiDBLite consensus disorder prediction 1 54 - -
Gso8g1896 427 CDD AP2 55 123 IPR001471 GO:0003700|GO:0006355
Gso8g1896 427 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WRI1 1 416 - -
Gso8g1896 427 ProSiteProfiles AP2/ERF domain profile. 158 216 IPR001471 GO:0003700|GO:0006355
Gso8g1896 427 Pfam AP2 domain 157 208 IPR001471 GO:0003700|GO:0006355
Gso8g1896 427 Pfam AP2 domain 56 114 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1896 Gso-Chr8 18623989 18629379 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1896 131 234 AP2-EREBP Transcription Factor Family AT5G57390 33.036 5.13e-12 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gso8g1896 AP2 2.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1896 - - gsj:114422618 812.757