Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1883 ATGCACCACAACCACAACCTTAACCTTGCAAGGTTGTGGATTGCTTTGCTTGCGGTCTCAACCACCGTAGTTCATTGCAAAACTGCCTCCCAAGATGTTTCAGCCCTTAATGTGATGTATACAAGCTTAAATTCCCCTTCAAAGCTGAGTGGCTGGAAATCAAGTGGAGGTGATCCGTGTGGCGACTCCTGGGAAGGAATCAAATGCTCAGGATCTTCAGTCACAGAAATAAATTTATCTGACCTGGGCCTTTCCGGATCAATGGGCTACCAGTTGTCCAGCTTAAAATCAGTTACCGACTTTGATTTGAGCAACAACAACTTCAAGGGTGATATACCATATCAACTTCCTCCAAATGCTCGTTATATAGATCTTTCTAAGAACGACTTCACTGGAAGTATACCTTATTCATTCTCTGAGATGGATGACCTCAACTACCTAAATCTTGCACATAATCAGCTCAAAAACCAGTTGGGCGATATGTTTGGGAAGCTCAGTAAACTCAAACAACTGGATGTATCATTCAATTCACTATCAGGAGACCTACCCCAGAGTCTCAAATCGCTCAAAAGCCTCGAGAAGTTGCACCTACAAAACAACCAATTCACTGGTTCAGTAAATGTCCTTGCCAGCCTTCCACTTGAAGATTTGAATGTTGAAAACAACAAATTTACTGGTTGGGTTCCTGAGGAGTTAAAGGAGATAAATAATTTGCAAACTGGAGGAAACTCTTGGTCAAGTGGACCAGCACCTCCTCCTCCTCCTGGTACTCCCCCTATCAAGCATTCCGAGAAAAAGAATGATAAATCTGTTATTAGTGGAATAGCTATAGCAGGCATAGCCTTTGGTGTACTAGCAGTAATTATAATTGTTGTTGCTCTTTCTAAGAGAAGATCATCAAAAACTTCTTCACATTTTATCGATGAAGACAGGCATAGCCAGCATAGATCTTTTACACCCCTTGCATCTCAGGAGTTATCAAAAGATTCGGGTCATGATGTCAGCAAAGACTACATAGGATTTAAGTCAATGGATTCTACTTCGATTGACGTAAAGGCTTTGCAAAAATCTCCATCAGTTAGTGTTAGGTCATCAGTCTCCGATTGTGTGCAATCCTTTAATGACAACGAGTTTGCGAATCGTCTAAATTCTAAGAGAAGCACATCAATCCGTGTTACTACTTTTTCACATGCAGAGTTACAGTCTGCTACTGCTAATTTTGCTTCGGGTCGACTTCTTGGTGAAGGATCCATAGGATGTGTTTATCGGGCTAAATATGCTGATGGAAAGGTATTGGCTGTAAAAAAGATCAATCCTTCGCTTTTGCATGGTGGTCCTTCCGAGGAATTCTCTCAGATTGTTTCAAGGATCAGCAAACTTCACCACCCAAATATTGTTGAGCTTGTCGGTTATTGTTCGGAACCGGAGCACATGTTAATATATGATTATTTCAGAAATGGCTCCCTCCATGACTTTTTACACTTATCGGACGACTTCAGCAAACCCCTAACTTGGAACACCAGAGTCAGAATTGCATTGGGAGCAGCTCGGGCTGTTGAGTACCTACATGAAATTTGTTCGCCTCCTTTATTGCACAAGAATATTAAGTCTTCCAATATTTTGCTTGACACCGATCTGAATCCTCGTCTCTCAGACTATGGTTTGGAATCCTTCTACCAGCGTACTGGCCAAAATCTTGGGGCAGGATATAATGCACCAGAATGCACAAAACCTTCAGCCTATACCCAGAAGAGTGATGTATACAGTTTTGGAGTAGTGATGCTGGAACTTTTGACAGGTCGAATGCCTTTAGACAGTTCAAAGACAAAAGCAGAACAAAGCCTGGTTCGTTGGGCCACCCCACAGCTTCATGACATTAATGCGGTGGAAAAAATGGTGGACCCTGCCTTGCGGGGGCTTTACCCTCCTAAGTCACTCTTCCGATTTGCTGATATTGTCGCCCTCTGTGTTCAGTCTGAGCCTGAATTTCGGCCACCTGTGTCAGAGTTAGTTCAGGCTTTGGTGCGATTAGTTCAACGTTCAAGTATGACAATGAGGGAGGATTTTGAGTGA 2073 0.4264 MHHNHNLNLARLWIALLAVSTTVVHCKTASQDVSALNVMYTSLNSPSKLSGWKSSGGDPCGDSWEGIKCSGSSVTEINLSDLGLSGSMGYQLSSLKSVTDFDLSNNNFKGDIPYQLPPNARYIDLSKNDFTGSIPYSFSEMDDLNYLNLAHNQLKNQLGDMFGKLSKLKQLDVSFNSLSGDLPQSLKSLKSLEKLHLQNNQFTGSVNVLASLPLEDLNVENNKFTGWVPEELKEINNLQTGGNSWSSGPAPPPPPGTPPIKHSEKKNDKSVISGIAIAGIAFGVLAVIIIVVALSKRRSSKTSSHFIDEDRHSQHRSFTPLASQELSKDSGHDVSKDYIGFKSMDSTSIDVKALQKSPSVSVRSSVSDCVQSFNDNEFANRLNSKRSTSIRVTTFSHAELQSATANFASGRLLGEGSIGCVYRAKYADGKVLAVKKINPSLLHGGPSEEFSQIVSRISKLHHPNIVELVGYCSEPEHMLIYDYFRNGSLHDFLHLSDDFSKPLTWNTRVRIALGAARAVEYLHEICSPPLLHKNIKSSNILLDTDLNPRLSDYGLESFYQRTGQNLGAGYNAPECTKPSAYTQKSDVYSFGVVMLELLTGRMPLDSSKTKAEQSLVRWATPQLHDINAVEKMVDPALRGLYPPKSLFRFADIVALCVQSEPEFRPPVSELVQALVRLVQRSSMTMREDFE* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1883 690 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 5 20 689 - -
Gso8g1883 690 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Gso8g1883 690 PANTHER OS01G0253100 PROTEIN 20 689 IPR045271 GO:0004714|GO:0006468
Gso8g1883 690 Pfam Leucine rich repeat 118 178 IPR001611 GO:0005515
Gso8g1883 690 SUPERFAMILY L domain-like 29 239 - -
Gso8g1883 690 ProSiteProfiles Protein kinase domain profile. 407 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1883 690 Gene3D Phosphorylase Kinase; domain 1 367 483 - -
Gso8g1883 690 MobiDBLite consensus disorder prediction 302 316 - -
Gso8g1883 690 Gene3D Ribonuclease Inhibitor 27 255 IPR032675 -
Gso8g1883 690 Pfam Protein tyrosine and serine/threonine kinase 410 674 IPR001245 GO:0004672|GO:0006468
Gso8g1883 690 SUPERFAMILY Protein kinase-like (PK-like) 386 674 IPR011009 -
Gso8g1883 690 MobiDBLite consensus disorder prediction 302 330 - -
Gso8g1883 690 Gene3D Transferase(Phosphotransferase) domain 1 484 689 - -
Gso8g1883 690 MobiDBLite consensus disorder prediction 238 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1883 Gso-Chr8 18391925 18399029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1883 9 689 Strubbelig Receptor Gene Family AT1G78980 61.516 0.0 849
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Gso8g1883 PK_Tyr_Ser-Thr 1.6e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1883 - - gmx:100785529 1221.45