Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1862 ATGAGGCCGATGCAACTGCCACCGCCTTCCGCTTCCGGGGCCAACCCTGCCCCTGCCACCACCAACAACAACAACAAGGAGCAGCGTCCCCAGCGCCGCCGCAAGGACCTCACGCTGCCGCTGCCGCAGCGAGACACCAACTTGGCGGTGCCGCTTCCTCTGCCGCCATCGACGGCGCCTGCTGCGGCGGCGAGCGGCGGAGCGAGCCAGCTGGCGGCGCAGCAGGTGATCCCTTTCTCGGAGCTGGAGAGACTGAACCGCATCGGGAGCGGGAGCGGCGGGACGGTGTACAAGGTGGTCCACCGCACGAGCGGGCGCGTGTACGCGCTGAAGGTGATATACGGTCACCACGAGGAGTCGGTGCGGCGGCAGATCCACCGGGAAATCCAGATCCTCCGTGACGTGGACGATGCGAACGTGGTGAAGTGTCACGAGATGTACGATCAGAACAGCGAAATCCAGGTGCTGCTGGAGTTCATGGACGGAGGTTCTCTGGAGGGGAAACACATCACGCAGGAGCAGCAGCTGGCAGATCTGTCTCGGCAGATTCTTAGGGGGCTGGCGTACCTGCACCGGCGGCACATCGTCCACAGGGACATCAAGCCGTCGAATCTGCTTATAAACTCGCGGAAGCAGGTGAAGATCGCTGACTTCGGGGTGGGTCGGATACTGAATCAGACGATGGATCCGTGCAATTCGTCGGTGGGGACGATCGCCTACATGAGTCCGGAGAGGATCAATACGGACATAAACGACGGGCAATACGACGCGTACGCAGGGGACATATGGAGCTTTGGGGTTAGCATACTGGAGTTCTACATGGGAAGGTTCCCCTTCGCGGTTGGGAGGCAGGGCGATTGGGCCAGTCTCATGTGCGCCATTTGTATGTCTCAGCCTCCCGAGGCTCCTCCTTCTGCTTCCCCTCACTTCAAGGACTTCATCTTGCGCTGTCTTCAGCGCGATCCCTCTCGCCGCTGGTCTGCTTCCAGGTTGCTCGAACACCCCTTCATTGCTCCGCCGCTGCCCAACCACAATCAGACTCCTCCAAACCTCCATCAGCTACTCCCTCCTCCGCCAAGGCCTCTTCCCTCCTAG 1095 0.6128 MRPMQLPPPSASGANPAPATTNNNNKEQRPQRRRKDLTLPLPQRDTNLAVPLPLPPSTAPAAAASGGASQLAAQQVIPFSELERLNRIGSGSGGTVYKVVHRTSGRVYALKVIYGHHEESVRRQIHREIQILRDVDDANVVKCHEMYDQNSEIQVLLEFMDGGSLEGKHITQEQQLADLSRQILRGLAYLHRRHIVHRDIKPSNLLINSRKQVKIADFGVGRILNQTMDPCNSSVGTIAYMSPERINTDINDGQYDAYAGDIWSFGVSILEFYMGRFPFAVGRQGDWASLMCAICMSQPPEAPPSASPHFKDFILRCLQRDPSRRWSASRLLEHPFIAPPLPNHNQTPPNLHQLLPPPPRPLPS* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1862 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Gso8g1862 364 Gene3D Phosphorylase Kinase; domain 1 63 161 - -
Gso8g1862 364 MobiDBLite consensus disorder prediction 341 364 - -
Gso8g1862 364 CDD PKc_MAPKK_plant_like 80 337 - -
Gso8g1862 364 ProSiteProfiles Protein kinase domain profile. 82 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1862 364 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4 29 358 - -
Gso8g1862 364 MobiDBLite consensus disorder prediction 338 364 - -
Gso8g1862 364 Pfam Protein kinase domain 83 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1862 364 SMART serkin_6 82 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1862 364 SUPERFAMILY Protein kinase-like (PK-like) 79 359 IPR011009 -
Gso8g1862 364 Gene3D Transferase(Phosphotransferase) domain 1 162 347 - -
Gso8g1862 364 ProSitePatterns Protein kinases ATP-binding region signature. 88 111 IPR017441 GO:0005524
Gso8g1862 364 MobiDBLite consensus disorder prediction 1 66 - -
Gso8g1862 364 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 29 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1862 Gso-Chr8 18217532 18219038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1862 1 353 MAP Kinase Kinase Gene Family AT1G51660 68.044 1.83e-171 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Gso8g1862 Pkinase 5.7e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1862 K13413 - gmx:100818488 633.254