Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1847 ATGCTTTCACTCAAATGCTTTAAGTGCCTGCAATCTCTTTTTGTCTTATCCGTTGCAAAGGGAGGCTTTCCTTGCTGCTGGTGTTTTGGCTCTTCCTGTATCATGGATGGTATTCATGGGGGTGATTCTCGGATACACATAACTGATGGACAGCATCCTATACACGTGCCATATGTGCAAGAACACGAGCATCATGGACTCCACCATATAAGCAATGGGAATGGGATAGATGATGATCATAATGATGGTGGTGATACTAACTGTGGTGGAAGTGAGAGTATGGAAGGTGAAGTCCCCTCCAACCATGGAAATCTCCCTGACAATCATGCTGTAATGATGGATCAAGGGGGTGATTCTGGGGATCAGCTTACGTTGTCTTTTCAGGGCCAGGTTTATGTCTTTGACTCCGTGTCACCAGAAAAGGTTCAAGCTGTACTACTGTTACTGGGAGGCCGCGAAATACCTCCAACTATGCCTGCCATGCCAGTATCTCCTAACCATAATAACCGGGGATATACTGGTACTCCGCAAAAATTCAGTGTCCCTCAGAGATTAGCTTCATTGATTAGGTTTCGTGAAAAGCGGAAGGAACGAAATTATGACAAAAAAATTCGCTATACTGTTCGTAAAGAAGTAGCATTAAGGATGCAAAGAAATAAAGGTCAGTTTACATCTTCCAAGTCCAATAATGATGAATCTGCATCAAATGCCACAAATTGGGGGATGGATGAAAACTGGACAGCAGACAATAGTGGATCCCAGCAGCAAGATATTGTTTGTAGGCACTGTGGCATCAGTGAGAAGAGTACACCAATGATGCGACGCGGGCCTGAAGGGCCAAGGACCCTCTGCAATGCTTGTGGTCTTATGTGGGCAAATAAGGGAATCCTGAGGGACCTATCAAGGGCGGCACCCTTATCTGGGACTATCAAGAATGAGAATAAAAGTTTAGAGGCCAACCAGATAGTCCATAGAGTTGCAGGAGAAGCTGATGATTCATCATGA 1005 0.4478 MLSLKCFKCLQSLFVLSVAKGGFPCCWCFGSSCIMDGIHGGDSRIHITDGQHPIHVPYVQEHEHHGLHHISNGNGIDDDHNDGGDTNCGGSESMEGEVPSNHGNLPDNHAVMMDQGGDSGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREIPPTMPAMPVSPNHNNRGYTGTPQKFSVPQRLASLIRFREKRKERNYDKKIRYTVRKEVALRMQRNKGQFTSSKSNNDESASNATNWGMDENWTADNSGSQQQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGILRDLSRAAPLSGTIKNENKSLEANQIVHRVAGEADDSS* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1847 334 SMART tify_2 116 151 IPR010399 -
Gso8g1847 334 ProSitePatterns GATA-type zinc finger domain. 260 287 IPR000679 GO:0006355|GO:0043565
Gso8g1847 334 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 255 307 - -
Gso8g1847 334 Pfam tify domain 121 150 IPR010399 -
Gso8g1847 334 Pfam GATA zinc finger 260 295 IPR000679 GO:0006355|GO:0043565
Gso8g1847 334 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Gso8g1847 334 ProSiteProfiles CCT domain profile. 184 226 IPR010402 GO:0005515
Gso8g1847 334 MobiDBLite consensus disorder prediction 219 253 - -
Gso8g1847 334 Pfam CCT motif 184 226 IPR010402 GO:0005515
Gso8g1847 334 Gene3D - 250 317 IPR013088 GO:0006355|GO:0008270
Gso8g1847 334 PANTHER GATA TRANSCRIPTION FACTOR 24 31 310 - -
Gso8g1847 334 CDD ZnF_GATA 259 315 IPR000679 GO:0006355|GO:0043565
Gso8g1847 334 SMART GATA_3 254 307 IPR000679 GO:0006355|GO:0043565
Gso8g1847 334 ProSiteProfiles GATA-type zinc finger domain profile. 254 313 IPR000679 GO:0006355|GO:0043565
Gso8g1847 334 MobiDBLite consensus disorder prediction 72 99 - -
Gso8g1847 334 PANTHER GATA TRANSCRIPTION FACTOR 28 31 310 IPR045280 GO:0006355
Gso8g1847 334 ProSiteProfiles Tify domain profile. 116 151 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1847 Gso-Chr8 18081375 18086853 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1847 35 333 Tify Gene Family AT1G51600 62.215 6.04e-132 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso8g1847 CCT 4.2e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1847 - - gmx:100812262 678.322