Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1828 ATGCCATCAAGCTCAAGGGGGATGAAAAAATTAAGATTCAATTTAGATTCTCTGCCTATTCCTCTTCCTGGTCGTGGAAGAAAAAGAGCATCGAAATCGTTTAGGCAAGGAATGAAGAAGAGTTCAGATGGACTAAAGACATTTGGAAGATCACTAAAGACTGGAGTGACTACTTGGGCAGTGTTCCCAGAAGATCTTAAAGTGTCTGAGAAAAAAGTATTTGATCCTCAAGATAAGAACCTTCTGTATTGGAACAAGTTTTTTGAGATTCTGTGCATTGTTTCTGTAGCATGCGATCCCTTCTTCTTTTACCTTCCTTATTTCAACCACAAGTCATTTTGCCTCGCCATAGATAACAACCTAGCAAGTTTTGCTGTCCCAATGAGAACAATATGTGATTTCATTTATCTCCTCCGCATAAGTTTTCAATTCCGCACTGCTTACATTGCTCCTTCATCTCGGGTATTTGGACGAGGTGAACTTGTTATAGATCCTACAAAGATTGCCAAGAGATATTTACAACGTTACTTCATCATTGACTTCATTTCTGTGCTGCCTATCCCACAGATTATAGTGTGGAAATATCTATACAGATCAGGACGTGTAGAAGTACTGGAAACAAAAACGGCACTGTTGAGAATTGTGATCCTGCAATATTTTCCAAGATTTCTACGCTTTTTACCTTTAGCTTCAGAAGTTAAAAGAACAGCGGGTGTTTTTTCTGAGAACGCATTGCTCGGTGCCATGTACTATTTGATCTGGTATATGCTTGCTAGTCATATAACTGGCTCTGTCTGGTACTTACTAGCCATTGAACGTAATGACACCTGCTGGAAGGATGCTTGTAAAAAAGTTGAAGGATGCAATACACATTTCTTGTACTGTTCGAATTCGAACAAGCATATGTCAGGGTATGAATCTTGGAGAAATGTCAGCGAGACTGTTCTGAAAAGTCGTTGCTTTGTTGAGGATGATTCCTCAGAATTTAACTATGGAATCTTCTCTCAAGCTATACAGTCTGATATTGTTGCTTCCGTAGAAGTTTTTCCTAAATTCTGTTACTGTTTGTGGTGGGGCCTTCAAAACTTGAGTACACTTGGTCAGGGACTTCTAACCAGTACCTACCCTAAAGAGGTCTTGTTTTCCATAGTAATAGCTATTATGGGGCTTATCCTTTTTGCTCTTCTGATTGGAAACATGCAGACCTACCTTCAATCAATGTCAGTTCGTCTTGAGGAAATGAGGATCAAAAGACGCGACTCTGAGCAGTGGATGCATCATCGCTTGCTTCCTCCGGAGCTAAGGGAAAGAGTGAGACGCTATGACCAATACAAGTGGCTGAACACCCGAGGAGTAGATGAAGAGAGCTTAGTTCAGAGTCTTCCAAAAGATCTCAGGAGAGATATCAAACGGCATCTTTGTTTGAATTTAGTCAGAAGGGTTCCTCTCTTTGCCAACATGGATGAACGTTTGCTTGATGCTATATGTGAGCGACTGAAGCCTAGTTTATATACAGAGGGAACTTACATAGTGAGGGAAGGGGATCCAGTTAATGAGATGCACTTCATCATACGTGGCCGTCTAGAGAGTGTCACTACAGATGGTGGAAGAAGTGGATTTTTCAACAGAGGTCTTCTGAAGGAAGCTGACTTCTGTGGAGAAGAGCTACTAACATGGGCCTTAGACCCCAAATCTGCTGCTAGCTTGCCAACATCGACGAGGACGGTGAAAGCTATAAATGAGGTTGAGGCATTTGCTTTGGAAGCAGAGGAGTTGAAGTTTGTTGCTTCCCAGTTTAGGCACATTCACAGCAGACAGGTTCAGCACACCTTCCGTTTCTATTCGCAGCAGTGGAGAACATGGGCTGCTATCTACATTCAAGCTGCGTGGAGGCGGCATTACAGGAGAAAGATTGCAGAACAGCGCAGGAGGGAGGAAGAAGAATTCTATACTTCTGTTTCCCCTTCAGGGCTTAGACTTGGAACAACCGTCTATGCTTCTCGCTTTGCTGCTAATGCACTTCATGGTCATAGGCTTCGTGGTTCAAGTTCGAGGGAGACGATCAAACTCCAAAAGCCCCCGGAACCTGACTTTGGTAATCTTGATGATGACTGA 2115 0.4255 MPSSSRGMKKLRFNLDSLPIPLPGRGRKRASKSFRQGMKKSSDGLKTFGRSLKTGVTTWAVFPEDLKVSEKKVFDPQDKNLLYWNKFFEILCIVSVACDPFFFYLPYFNHKSFCLAIDNNLASFAVPMRTICDFIYLLRISFQFRTAYIAPSSRVFGRGELVIDPTKIAKRYLQRYFIIDFISVLPIPQIIVWKYLYRSGRVEVLETKTALLRIVILQYFPRFLRFLPLASEVKRTAGVFSENALLGAMYYLIWYMLASHITGSVWYLLAIERNDTCWKDACKKVEGCNTHFLYCSNSNKHMSGYESWRNVSETVLKSRCFVEDDSSEFNYGIFSQAIQSDIVASVEVFPKFCYCLWWGLQNLSTLGQGLLTSTYPKEVLFSIVIAIMGLILFALLIGNMQTYLQSMSVRLEEMRIKRRDSEQWMHHRLLPPELRERVRRYDQYKWLNTRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEGTYIVREGDPVNEMHFIIRGRLESVTTDGGRSGFFNRGLLKEADFCGEELLTWALDPKSAASLPTSTRTVKAINEVEAFALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRRHYRRKIAEQRRREEEEFYTSVSPSGLRLGTTVYASRFAANALHGHRLRGSSSRETIKLQKPPEPDFGNLDDD* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1828 704 MobiDBLite consensus disorder prediction 677 704 - -
Gso8g1828 704 Pfam Ion transport protein 83 410 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gso8g1828 704 Gene3D Jelly Rolls 481 601 IPR014710 -
Gso8g1828 704 ProSiteProfiles cAMP/cGMP binding motif profile. 483 580 IPR000595 -
Gso8g1828 704 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 23 700 - -
Gso8g1828 704 CDD CAP_ED 483 614 IPR000595 -
Gso8g1828 704 Gene3D Helix hairpin bin 410 474 - -
Gso8g1828 704 Gene3D - 84 408 - -
Gso8g1828 704 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 23 700 - -
Gso8g1828 704 Pfam Cyclic nucleotide-binding domain 504 593 IPR000595 -
Gso8g1828 704 ProSiteProfiles IQ motif profile. 619 648 IPR000048 GO:0005515
Gso8g1828 704 SMART cnmp_10 483 614 IPR000595 -
Gso8g1828 704 MobiDBLite consensus disorder prediction 679 698 - -
Gso8g1828 704 PRINTS EAG/ELK/ERG potassium channel family signature 140 149 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso8g1828 704 PRINTS EAG/ELK/ERG potassium channel family signature 352 369 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso8g1828 704 PRINTS EAG/ELK/ERG potassium channel family signature 378 389 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso8g1828 704 PRINTS EAG/ELK/ERG potassium channel family signature 396 405 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso8g1828 704 PRINTS EAG/ELK/ERG potassium channel family signature 446 453 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso8g1828 704 SUPERFAMILY cAMP-binding domain-like 413 603 IPR018490 -
Gso8g1828 704 MobiDBLite consensus disorder prediction 19 46 - -
Gso8g1828 704 SUPERFAMILY Voltage-gated potassium channels 76 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1828 Gso-Chr8 17905527 17909607 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1828 1 698 Ion Channels AT1G15990 67.313 0.0 964
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1828 K05391 - gmx:100815308 1356.27