Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1821 ATGGATTGTTCATCATGGATTAACACTTCCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTAAGGTGGTAGAAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAGTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAGAAGTTGGCCGAAATGCTCTCAGTGGTGTGTGAGAATTACAACACTTTGAGAAGCCATTTGATGGAATACATGAGGAAAAATGGCGAAAAGGAGGTCAGCCCAACATCAAAGAAAAGAAAGTCTGAAAGCAGCAACAACAACAACAGTAATTTGATGGGAACTAACAATGGAAACTCAGAGAGCAGTTCTACTGATGAAGAGTCTTGCAAGAAACCAAGGGAGGAAACCATCAAAGCAAAAATTTCAAGAGTTTATGTCAGGACTGAATCATCTGATACTAGCCTTATTGTGAAAGATGGATACCAATGGAGGAAATATGGACAAAAGGTGACCAGAGATAACCCTTACCCTAGAGCATATTTCAAGTGCTCTTTTGCTCCAAGCTGCCCTGTCAAAAAGAAGGTGCAAAGAAGTGTGGATGATCATTCTGTTCTGCTTGCTACTTATGAAGGGGAGCACAATCATCCTCAGGCTTCTTCCCAAATGGAAGCAACATCAGGTTCTGGCCGTAGTGTGACCCTTGGTTCAGTGCCTTGTTCAGCATCTCTCAGCACTTCCACTCCAACACTTGTTACCCTTGACTTGACAAAATCTAAGGGAAGCAACGATTCCAAGAGCACAAAACCTAAAGGAGATTCACCTAAAGTACCTCAGGTTTTGGTGGAACAGATGGCTACTTCTTTGACCACGGATCCTAATTTTAGAGCAGCACTTGTTGCTGCCATCTCAGGAAGATTGTTGCACAATAATTAA 942 0.4278 MDCSSWINTSLDLSINPRRVHEEAVPKVVESKLFSLGMPKFNVEEESTSDLEEELKRVSAENKKLAEMLSVVCENYNTLRSHLMEYMRKNGEKEVSPTSKKRKSESSNNNNSNLMGTNNGNSESSSTDEESCKKPREETIKAKISRVYVRTESSDTSLIVKDGYQWRKYGQKVTRDNPYPRAYFKCSFAPSCPVKKKVQRSVDDHSVLLATYEGEHNHPQASSQMEATSGSGRSVTLGSVPCSASLSTSTPTLVTLDLTKSKGSNDSKSTKPKGDSPKVPQVLVEQMATSLTTDPNFRAALVAAISGRLLHNN* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1821 313 PANTHER TRANSCRIPTION FACTOR 1 313 - -
Gso8g1821 313 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 313 IPR044810 GO:0003700
Gso8g1821 313 MobiDBLite consensus disorder prediction 216 236 - -
Gso8g1821 313 Coils Coil 48 68 - -
Gso8g1821 313 ProSiteProfiles WRKY domain profile. 155 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso8g1821 313 MobiDBLite consensus disorder prediction 215 236 - -
Gso8g1821 313 Gene3D WRKY domain 143 221 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso8g1821 313 Pfam WRKY DNA -binding domain 161 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso8g1821 313 SUPERFAMILY WRKY DNA-binding domain 156 220 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso8g1821 313 MobiDBLite consensus disorder prediction 258 280 - -
Gso8g1821 313 SMART WRKY_cls 160 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso8g1821 313 MobiDBLite consensus disorder prediction 102 126 - -
Gso8g1821 313 MobiDBLite consensus disorder prediction 89 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1821 Gso-Chr8 17852609 17854925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1821 4 313 WRKY Transcription Factor Family AT1G80840 51.875 1.38e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso8g1821 WRKY 2.5e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1821 - - gmx:100170678 565.459