Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso8g1820 | ATGTCGGGGCAAACGCAGCGTCTGAACGTGGTCCCCACCGTGACGATGCTGGGAGTGGTCAAGGCGCGTCTAGTCGGCGCCACGCGCGGCCACGCGCTCCTGAAGAAGAAGAGCGACGCGCTCACGGTGCAGTTCCGCCAGATCCTGAAGAAGATCGTGTCCACGAAAGAATCTATGGGCGACATCATGAAAACGTCGTCGTTCGCGCTCACCGAGGCAAAATACGTCGCCGGCGACAACATCAAGCACGTCGTCCTCGAAAACGTGAAAGAAGCCTCCCTCCGCGTCCGGTCGCGCCAGGAGAACGTCGCCGGAGTGAAACTCCCGAAATTCGACTACACCGCCGACGCCGACGCCACGAAAAACGACCTTACGGGACTCGCACGTGGTGGGCAGCAGGTGCAGCAGTGCCGCGCCGCCTACATCAAGGCAATCGAGGTGCTCGTGGAGCTCGCGTCCCTTCAGACGTCGTTTCTGACCCTCGATGAGGCCATCAAGACCACGAATCGTAGGGTTAACGCTCTGGAGAACGTGGTGAAGCCGCGACTCGAGAACACGATTAGTTACATCAAGGGGGAGCTGGACGAGCTCGAGAGGGAGGATTTCTTCAGGCTAAAGAAGATTCAGGGGTATAAGAAGAGGGAGATTGAGAGGCAGATGCTGCTGCAGAACAACTCCAATGTCGAGACTAATCTCCCTTTGCGCAAAGGGGTTTCGTACAATTCTGCTCACAATTTGTTGTCTGTGGGTGACAAAGATGAGGATATTATTTTCTGA | 777 | 0.5637 | MSGQTQRLNVVPTVTMLGVVKARLVGATRGHALLKKKSDALTVQFRQILKKIVSTKESMGDIMKTSSFALTEAKYVAGDNIKHVVLENVKEASLRVRSRQENVAGVKLPKFDYTADADATKNDLTGLARGGQQVQQCRAAYIKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTISYIKGELDELEREDFFRLKKIQGYKKREIERQMLLQNNSNVETNLPLRKGVSYNSAHNLLSVGDKDEDIIF* | 259 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso8g1820 | 258 | PANTHER | V-TYPE ATP SYNTHASE SUBUNIT D | 1 | 258 | IPR002699 | GO:0046961 | |
| Gso8g1820 | 258 | Pfam | ATP synthase subunit D | 18 | 209 | IPR002699 | GO:0046961 | |
| Gso8g1820 | 258 | Gene3D | - | 1 | 199 | - | - | |
| Gso8g1820 | 258 | Coils | Coil | 180 | 200 | - | - | |
| Gso8g1820 | 258 | TIGRFAM | V_ATPase_subD: V-type ATPase, D subunit | 9 | 213 | IPR002699 | GO:0046961 | |
| Gso8g1820 | 258 | PANTHER | V-TYPE PROTON ATPASE SUBUNIT D-RELATED | 1 | 258 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso8g1820 | Gso-Chr8 | 17837808 | 17839124 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso8g1820 | 1 | 258 | Primary Pumps ATPases(2) | AT3G58730 | 76.208 | 1.53e-146 | 409 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso8g1820 | K02149 | - | gmx:100801612 | 494.197 |