Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1818 ATGCATACATATTACATAATACTTGCAGTTTCAGTTCGATCGCATGTGACTCGGACTCTTCCATTCTTCCCCCTCTTCATTAATTTCCACAAATTAAGGAGTAGACTAGAGAATATGACTGTGACAGGTTCATCTTCTGGGCAGCCTCAATTCATTGCCAGCACCGGTGGTAGCCGGAGCTTCTCAAATGCGCCCTTGATTGAAAACTCAGATACTGATCAAATTGTTGTGCCTGATAGAACAAGCTGGAAAAACTTATTTGCATACATTGGGCCTGGATTTCTTGTTTCCATTGCATATATCGACCCAGGAAACTTTGAGACAGATCTTCAATCAGGGGCACAATATAAATATGAGTTACTTTGGATCATATTGGTGGCGTCATGTGCTGCACTTCTAATTCAAACAATGGCAGCTAATCTTGGGGTTGTCACTGGAATGCACCTAGCAGAGCATTGTAGAGCTGAATATTCTCGGGTGCCTAACTTTATCCTTTGGGTGATTGCTGAAATTGCCGTAGTGGCCTGTGACATTCCTGAAGTAATTGGGACAGCCTTTGCATTGAACATGCTCTTCAACATACCAGTTTGGATTGGTGTTCTTCTGACAGGATCCAGTACATTGATCCTCTTAGCATTACAGCAATATGGGATTAGGAAACTTGAATTCTTCATTGCATTTCTAGTATTCACAATTGCTGGTTGCTTTATGGCTGAGCTTGGATATGCAAAGCCGGTGGCCAAAGAAGTTGTGACGGGTCTTTTTGTTCCAAAACTTCAGGGGCATGGTGCCACTGGTCTTGCAATTTCACTCCTTGGGGCAATGGTTATGCCCCACAATCTCTTCCTCCACTCAGCGCTGGTGCTTTCCAGGAAAATACCGCGATCAGTTCGTGGAATCAAAGAGGCTTGCAGATTTTATATGATAGAAAGTGCCTTTGCTCTTACGGTGGCCTTTCTCATAAATATTTCCGTTATTTCTGTAAGTGGTGCAGTTTGCAATTCTTCAAATTTAAGTGCTGGAGATCAGAATAGCTGTCAGGATTTGGATTTGAACAAGGCCTCCTTTTTATTAAGAAATGTCTTGGGCAAATGGAGTTCAAAACTATTTGCAATTGCTTTACTTGCCTCAGGTCAAAGTTCTACTATAACAGGAACATATGCAGGGCAATATGTCATGCAGGGATTTCTTGATTTGCGACTAAAGTCATGGATTCGGAATCTGCTAACTCGTTGCTTAGCCATTGTTCCTAGTTTGATTGTTGCACTCATTGGTGGCTCTGCTGGAGCTGGGGAGCTCATCATAATTGCATCGATGATCCTATCATTTGAGCTTCCTTTTGCTTTGATTCCACTCCTCAAGTTCACTAGCAGTAAAATCAAGATGGGAGAACATGTCAACTCAATCACGATCTCGGCTATTACTTGGATCATTGGTTCCCTCATCATGGGCATAAATATATACTATTTATTGACTAGCTTTGTCAAATTGCTTCTGCACGTCCACTTAAAAATTGTTACTAAGGTGTTTCTTGGAATATTGGGATTTTCGGGTGTGACATTATATATGGGAGGCATTGCATATCTAGTGTTTCGCAAAAATAAAAAAACTACACACTTTCTGGCATTTAGAACATCGGAAGAACAGCAAGTGGCAAATGAACAAGGTGATATATCAATGTATAATCTGCCAAGAGAAGACATAGTAAGCATGCAATTGCCTCAAAATAGTAGGAGTCCCACAGATATTGATAGAGAAATATCTTAG 1767 0.4103 MHTYYIILAVSVRSHVTRTLPFFPLFINFHKLRSRLENMTVTGSSSGQPQFIASTGGSRSFSNAPLIENSDTDQIVVPDRTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALLIQTMAANLGVVTGMHLAEHCRAEYSRVPNFILWVIAEIAVVACDIPEVIGTAFALNMLFNIPVWIGVLLTGSSTLILLALQQYGIRKLEFFIAFLVFTIAGCFMAELGYAKPVAKEVVTGLFVPKLQGHGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRGIKEACRFYMIESAFALTVAFLINISVISVSGAVCNSSNLSAGDQNSCQDLDLNKASFLLRNVLGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKSWIRNLLTRCLAIVPSLIVALIGGSAGAGELIIIASMILSFELPFALIPLLKFTSSKIKMGEHVNSITISAITWIIGSLIMGINIYYLLTSFVKLLLHVHLKIVTKVFLGILGFSGVTLYMGGIAYLVFRKNKKTTHFLAFRTSEEQQVANEQGDISMYNLPREDIVSMQLPQNSRSPTDIDREIS* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1818 588 Hamap Divalent metal cation transporter MntH [mntH]. 70 494 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gso8g1818 588 Pfam Natural resistance-associated macrophage protein 106 468 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gso8g1818 588 PRINTS Natural resistance-associated macrophage protein signature 165 191 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gso8g1818 588 PRINTS Natural resistance-associated macrophage protein signature 193 212 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gso8g1818 588 PRINTS Natural resistance-associated macrophage protein signature 218 239 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gso8g1818 588 PRINTS Natural resistance-associated macrophage protein signature 268 291 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gso8g1818 588 PRINTS Natural resistance-associated macrophage protein signature 378 397 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gso8g1818 588 PRINTS Natural resistance-associated macrophage protein signature 406 423 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gso8g1818 588 PRINTS Natural resistance-associated macrophage protein signature 438 457 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gso8g1818 588 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 85 460 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gso8g1818 588 PANTHER METAL TRANSPORTER NRAMP1 50 577 - -
Gso8g1818 588 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 50 577 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1818 Gso-Chr8 17801853 17810398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1818 54 584 Inorganic Solute Cotransporters AT1G15960 77.861 0.0 855
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1818 K21398 - gmx:100800523 1064.68