Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1808 ATGGATCTTCAAAGGCAAGAGCCATGCCCTTCTGAAAATTTGAACATCATCACATTTTCAGATACCGTACCATGCCAAAATCCTTCCATCAACACTCAAACAAAGACGAATCAGACACAAATGGAAGATCAAAAACACCAGCATGATTCCGTTCCTCGTGTTTTACTAGATCTAAGTCTCTCCTCCAACAAGGATTCAGGTGATGATAACTCAAAGCTTAAGCCAGAACTCAACCTCCTCAATTGTTTCCATACAAATTTCTCTGAAAACTCATCAGAATCTAGTCAGGGAAATGAACTGGATCCTCGTGTTTTCTCATGCAACTACTGCCAAAGAAAGTTTTATAGTTCCCAGGCACTAGGTGGACACCAGAATGCGCACAAACGTGAGAGAACTTTGGCAAGAAGAGGATACAAAGCTGGTGCTGCCGATTTTGGACACACATACTCCAACATGCATTTTCTGCCTTCACATGGCTTATACAACAAAGCACTTGGAATTCAGGTTCATTCTATGATCAACAAACCTTCTTATCAAACACCCTTTTTCGGGTTGTGCCGTTCCAATAATGGGTGGCAGAGGCAACCTTTGGATTCACAACCAGCAATTGGGAACTTTCGTGTGGGGGCAGAAACTGAGTCATCATCCTTGGCTGATAGTGTTCCAAAGTTAGGCAAGTTTTCCACAAGGTTGGTGGCAGAAGGGTTTGGAGGTTACTGCTTTGGTAGCATTACTACTCATTTGAAGTCTAAACAACAAGAGGAGTTGCAGAAGCTTGACTTGTCCCTTAAGCTCTAA 798 0.4261 MDLQRQEPCPSENLNIITFSDTVPCQNPSINTQTKTNQTQMEDQKHQHDSVPRVLLDLSLSSNKDSGDDNSKLKPELNLLNCFHTNFSENSSESSQGNELDPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLARRGYKAGAADFGHTYSNMHFLPSHGLYNKALGIQVHSMINKPSYQTPFFGLCRSNNGWQRQPLDSQPAIGNFRVGAETESSSLADSVPKLGKFSTRLVAEGFGGYCFGSITTHLKSKQQEELQKLDLSLKL* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1808 265 ProSitePatterns Zinc finger C2H2 type domain signature. 107 127 IPR013087 -
Gso8g1808 265 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 132 IPR013087 -
Gso8g1808 265 MobiDBLite consensus disorder prediction 25 50 - -
Gso8g1808 265 MobiDBLite consensus disorder prediction 25 40 - -
Gso8g1808 265 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 37 265 - -
Gso8g1808 265 SUPERFAMILY beta-beta-alpha zinc fingers 102 132 IPR036236 -
Gso8g1808 265 Gene3D Classic Zinc Finger 83 144 - -
Gso8g1808 265 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 37 265 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1808 Gso-Chr8 17703030 17704268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1808 1 265 C2H2 Transcription Factor Family AT5G10970 39.789 2.82e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso8g1808 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1808 - - gmx:102666245 513.457