Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1803 ATGGCCAGACCCCAACAACGCTATCGTGGAGTACGCCAAAGGCACTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTTTGTTGAAGACTAGAATATGGCTAGGAACTTTTGAAACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCTAGGCTCATGTGTGGGTCAAAAGCACGCACCAATTTCCCATACAACCCCAATGAGCCACATTCATCATCATCCAAGCTTCTCTCTGCCACTTTAACGGCCAAGTTACATAAGTGTCACATGGCTTCCCTTTCCCTTCAAATGGCCAAGCAGAAACCACCACAGAGCAAAGAGCCTCAACCATCACATGGGTCATCCAATCCATTTGCCTTTGCCAATGTCATTGCTGGATCAAGCGCTGACACCGGTTTTCGATGGCCAGATAACAGACATGAGGAATTCAGATGGCTTGAAGGGAATTGGGTTGGTGTGGAAGGCCAGGTTGAAGTTTCCCATCAACAGTTTCAGCCAGTTCTTGAAGATGATCACATAGAGCAGATGATACAGGAGTTGCTTGATTATGGATCAATTGAGCTTTGCTCTGTTGGCTTAACCTAG 588 0.4728 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGSKARTNFPYNPNEPHSSSSKLLSATLTAKLHKCHMASLSLQMAKQKPPQSKEPQPSHGSSNPFAFANVIAGSSADTGFRWPDNRHEEFRWLEGNWVGVEGQVEVSHQQFQPVLEDDHIEQMIQELLDYGSIELCSVGLT* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1803 195 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Gso8g1803 195 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Gso8g1803 195 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Gso8g1803 195 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Gso8g1803 195 MobiDBLite consensus disorder prediction 98 118 - -
Gso8g1803 195 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Gso8g1803 195 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Gso8g1803 195 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Gso8g1803 195 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 191 - -
Gso8g1803 195 MobiDBLite consensus disorder prediction 97 118 - -
Gso8g1803 195 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Gso8g1803 195 PANTHER ETHYLENE RESPONSE FACTOR 1 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1803 Gso-Chr8 17658468 17659927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1803 1 192 AP2-EREBP Transcription Factor Family AT5G25190 62.694 6.36e-73 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso8g1803 AP2 8.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1803 - - gmx:100527365 383.259