Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1797 ATGAACGGCGAAATTTTCTTACACGCGCCAACAACCACCACCGCCACCACCACTACTAACTTTTTGCTTCCAAAGCCCGAAACGAAGTCGTCAGAGAAGCTACGCTACGAAACGGCGTTGGAAGGAATCGCCGCGGTCGTAGGAGAACATGTCCTCTTCGGAACGACATCTTCGTCGCATGTTTCGGAGACTCCGAAGAAGACATTGGTGGGCAAGAGCTACCGAGGAGTGCGGAAGCGACCTTGGGGGAGGTGGTCGGCGGAGATACGCGACCGCATCGGGCGGTGCCGCCATTGGCTGGGGACCTTCGACACCGCGGAGGAGGCGGCGCGTGCGTACGACGCGGCGGCGAGGCGCCTGAGGGGGGCGAAGGCGAGAACCAACTTCCAGATACCATCGGTGTTGCCACTTTCTCCGGAAGGGGTTCATGGTGGTGCCGTGAAGCCGAAAACCGCGCGTAACAACGCTAGGAAGTGTTCTTCTGTGGAACAATTGTTCAGTGGGGTGCCTCAACTTCGAAAAGATGATGGTATCGGTGAGAATGGGAATGTGGAGGTGGATTTGAAGCTTGGTGTGAACTTTGGCTTTTACAAACACTAG 600 0.565 MNGEIFLHAPTTTTATTTTNFLLPKPETKSSEKLRYETALEGIAAVVGEHVLFGTTSSSHVSETPKKTLVGKSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGAKARTNFQIPSVLPLSPEGVHGGAVKPKTARNNARKCSSVEQLFSGVPQLRKDDGIGENGNVEVDLKLGVNFGFYKH* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1797 199 Gene3D AP2/ERF domain 72 131 IPR036955 GO:0003700|GO:0006355
Gso8g1797 199 ProSiteProfiles AP2/ERF domain profile. 73 130 IPR001471 GO:0003700|GO:0006355
Gso8g1797 199 SUPERFAMILY DNA-binding domain 73 131 IPR016177 GO:0003677
Gso8g1797 199 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF084 31 185 - -
Gso8g1797 199 CDD AP2 72 131 IPR001471 GO:0003700|GO:0006355
Gso8g1797 199 Coils Coil 106 126 - -
Gso8g1797 199 Pfam AP2 domain 73 122 IPR001471 GO:0003700|GO:0006355
Gso8g1797 199 SMART rav1_2 73 136 IPR001471 GO:0003700|GO:0006355
Gso8g1797 199 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Gso8g1797 199 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Gso8g1797 199 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 31 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1797 Gso-Chr8 17598830 17599429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1797 16 136 AP2-EREBP Transcription Factor Family AT1G80580 56.835 2.47e-30 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso8g1797 AP2 2.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1797 - - gmx:102667667 378.252