Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1796 ATGGGGGAGCCATGCCAAAAATATTGGTTTTCTGATATGGAAATACAAGATATTGATTTCTTTAATCAAAGCCACAACCACAAGATTGAGTCACTTGATCATGATGAGGATCAGATCTTTCGAGAGATCATGCATCAGCCAGTTTTCTCTTCAGACATCGATACTCACTTGCCCAGCAAAATTCAAAGTAAATCAATCCACGGTGGTGTTAGTAGTGGTTATAATACTTACACAGTCCTCGCCAACAACAAGAGTAATAATAGCAACCTTGCGATGAAGAGCAACACCTCCAACTTCATCTTCTCATCACAATTACATGCACCACCAGAGAAATTACCTGCCACAGCCAGTACTTCTCCAACCGCATACATTCTTTCTTTTGATGACTCCACCGTAGTTGCGGCTACGCGCCAAAACTACGGTGAAAAACAGCCCTACCACCAGGAAGTGGTGCTAGGGAGTGGTGGCGCATGTCTTCCCTCAAAAGGGGTCTCAGAAGGACACGACTTTGAACCTAAGGCCAAGCCAACAACAAAGAGAAGTAGAAGCTCTGCGGAGACCCTAGTCCATATAATGACAGAGAGAAAGAGAAGACGGGAACTCACAGAGAGATTCATTGCACTTTCAGCCACCATACCTGGCTTAAAGAAGATTGACAAGGCCACTATACTTAGTGAAGCAATCACTCATGTGAAAAGACTTAAAGAACGTGTAAGGGAGCTAGAAGAACAACGTAAGAAGACAAGGGTAGAGTCAGTGTCATTTGTTCATCAGAGATCCCACATTGCAACTGTCAAAGGCACCACCTCTGGTGCAATGAACTCTGATGAATGCTGTAGAACCAACGAAGCACTCCCTACAGTGGAAGCAAGAGTGTTTAAAAAAGATGTACTCCTCCGGATTCACTGCAAGATACAAAGTGGCATTTTGATCAAAATTTTGGACCATCTTAATAGTCTTGATCTCTCCACAATCAGCAACAGTGTAATGCCATTTGGAAGTTCAACTCTAGACATCAGCATTATTGCTCAGATGGGTGACAACTTCAACGTAACAACAATGAACGATCTAGTGAAAAATCTGAGAATGACTCTCTCGCAGTCATCTGAAGTACAAGTACAACAATGA 1128 0.4282 MGEPCQKYWFSDMEIQDIDFFNQSHNHKIESLDHDEDQIFREIMHQPVFSSDIDTHLPSKIQSKSIHGGVSSGYNTYTVLANNKSNNSNLAMKSNTSNFIFSSQLHAPPEKLPATASTSPTAYILSFDDSTVVAATRQNYGEKQPYHQEVVLGSGGACLPSKGVSEGHDFEPKAKPTTKRSRSSAETLVHIMTERKRRRELTERFIALSATIPGLKKIDKATILSEAITHVKRLKERVRELEEQRKKTRVESVSFVHQRSHIATVKGTTSGAMNSDECCRTNEALPTVEARVFKKDVLLRIHCKIQSGILIKILDHLNSLDLSTISNSVMPFGSSTLDISIIAQMGDNFNVTTMNDLVKNLRMTLSQSSEVQVQQ* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1796 375 SMART finulus 191 240 IPR011598 GO:0046983
Gso8g1796 375 Gene3D - 183 255 IPR036638 GO:0046983
Gso8g1796 375 PANTHER BHLH TRANSCRIPTION FACTOR 6 367 - -
Gso8g1796 375 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 185 234 IPR011598 GO:0046983
Gso8g1796 375 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 188 260 IPR036638 GO:0046983
Gso8g1796 375 PANTHER TRANSCRIPTION FACTOR NAI1 6 367 - -
Gso8g1796 375 MobiDBLite consensus disorder prediction 166 180 - -
Gso8g1796 375 MobiDBLite consensus disorder prediction 163 185 - -
Gso8g1796 375 Coils Coil 224 251 - -
Gso8g1796 375 Pfam Helix-loop-helix DNA-binding domain 190 234 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1796 Gso-Chr8 17581556 17584090 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1796 106 366 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.453 1.01e-40 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso8g1796 HLH 2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1796 - - gsj:114424526 718.383