Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1793 ATGCTCTCGTTACTTCCTGATATGATGGAGGACTCATGGGAAAACTGGCTCTCTCATCTGGAAATGAATGATGATTTTGGCTGCACCAACGCTGTATCCTTTGATGAGATGGTAAGGTTCAACAATGATAGCTCAAATGTTGTGGCAGCTATTGGGCCAAAAGTGGAATACACTGACTCTTATTTGAAGAGCAGCGAAGAGGAATTTGGAACAAGTTGTTATTGGCCTAAAAGGGGTGTAGAGAACAACCATGAGTTGGAGGCAAAGACAATAAGGGATAACGACAGAGGAACAAAAAGGGCAAGAACCTCTACTGAGACACAGTATCATGTAATGTCAGAGAGAAAAAGGAGACAGGATATAGCGGAGAAATTCTTAGCACTCTCAGCTACTATACCTGGCTTGAAGAAGTTAGACAAGGCTACTGTGCTTCGGGAAGCCCTCAACTACATGCAACAACTTCAACAACGCATAGCAGTGCTGGAAAAAGCAGGGGGCAATAAGAATAAAAGTATAAAGTCATTGATCATCACGAAATCACGTCTTTGTTCTGCGTCATGTGAAACAAACTCTATTAGTGAAGTGCTCCCTGAAGTTGAAGCAAGAGGTTTAGGGAAGGAAGTACTCATTAGAATCTATTGTGAGAAACGAAAGGGCATCATACTCAAGCTATTGGCCCTACTAAAAGATCTTCATCTCTCAATAGCCAGTAGCAGCGTATTGCCATTTGGAAACTCTATCCTCAACATTATCATAATTGCTCAGATGAGTGAGAAATACAACATGACGGTGAACGATTTGGCTAAGAGCTTGAAGCAGATCTTTTGA 828 0.4167 MLSLLPDMMEDSWENWLSHLEMNDDFGCTNAVSFDEMVRFNNDSSNVVAAIGPKVEYTDSYLKSSEEEFGTSCYWPKRGVENNHELEAKTIRDNDRGTKRARTSTETQYHVMSERKRRQDIAEKFLALSATIPGLKKLDKATVLREALNYMQQLQQRIAVLEKAGGNKNKSIKSLIITKSRLCSASCETNSISEVLPEVEARGLGKEVLIRIYCEKRKGIILKLLALLKDLHLSIASSSVLPFGNSILNIIIIAQMSEKYNMTVNDLAKSLKQIF* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1793 275 Gene3D - 101 165 IPR036638 GO:0046983
Gso8g1793 275 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 105 154 IPR011598 GO:0046983
Gso8g1793 275 PANTHER BHLH TRANSCRIPTION FACTOR 14 275 - -
Gso8g1793 275 Coils Coil 144 164 - -
Gso8g1793 275 ProSiteProfiles ACT domain profile. 209 275 IPR002912 -
Gso8g1793 275 SMART finulus 111 160 IPR011598 GO:0046983
Gso8g1793 275 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 108 166 IPR036638 GO:0046983
Gso8g1793 275 Pfam Helix-loop-helix DNA-binding domain 110 155 IPR011598 GO:0046983
Gso8g1793 275 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 14 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1793 Gso-Chr8 17548673 17551702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1793 6 272 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 35.714 8.34e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso8g1793 HLH 2.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1793 - - gmx:100808003 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g3749 11 53085949 53090050 Gso8g1793 8 17548673 17551702 PCT
Gso8g1793 8 17548673 17551702 Gso11g3751 11 53106259 53110619 PCT