Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1758 ATGGTGCAATCAAGGAAATTCAGAGGTGTGAGGCAACGCCATTGGGGCTCTTGGGTTTCTGAGATTCGTCACCCATTATTGAAAAGGAGGGTGTGGCTTGGGACATTCGAGACAGCTGAGGAAGCAGCAAGAGCATATGATGAGGCAGCCATTTTGATGAGTGGAAGAAATGCAAAAACAAACTTCCCAGTTGGTGAAAACCAAATAGTGGGAAATCACAGTTCAAACACTTCCTCTTCCTCCACTACAACATTGTCTGCAGTTCTGAGTGCGAAGCTGAGAAAGTGTTGCAAGTCCCCTTCACCTTCCCTCACTTGCCTGAGGCTTGACACTGAGAATTCCCACATTGGTGTGTGGCAGAAGCGAGCGGGGCCTCGTTCCGACTCAAACTGGATCATGATGGTTGAGTTGGAAAATAAGAACAACGACAACGAGGGTGATCATCATCAGGGTCCTTCTTCTTCTGATGATTCAGAATTTCCTGTTGTTGTTGTTGATGTTGATGCCCAAGAGAAGGTAAAGCCTGAAGAAGAAAGCACTGGCTTAGATGAGGAACAGAAAATGGCCCTACAGATGATAGAGGAACTTCTCAATAGGAATTGA 603 0.461 MVQSRKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDEAAILMSGRNAKTNFPVGENQIVGNHSSNTSSSSTTTLSAVLSAKLRKCCKSPSPSLTCLRLDTENSHIGVWQKRAGPRSDSNWIMMVELENKNNDNEGDHHQGPSSSDDSEFPVVVVDVDAQEKVKPEEESTGLDEEQKMALQMIEELLNRN* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1758 200 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Gso8g1758 200 MobiDBLite consensus disorder prediction 141 186 - -
Gso8g1758 200 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WIN1-LIKE 1 200 - -
Gso8g1758 200 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Gso8g1758 200 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Gso8g1758 200 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Gso8g1758 200 MobiDBLite consensus disorder prediction 169 186 - -
Gso8g1758 200 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Gso8g1758 200 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Gso8g1758 200 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Gso8g1758 200 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Gso8g1758 200 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1758 Gso-Chr8 17157877 17159404 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1758 1 200 AP2-EREBP Transcription Factor Family AT1G15360 61.905 8.18e-79 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso8g1758 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1758 - - gmx:100785898 365.54