Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1730 ATGGTTGGAGGTTCGTTAGCAGGGTTGCAAGAGCACCTCAAGTTAGCCCGTGACTACGCTCTCGAAGGGCTCTATGACACCTCCATCATCTTCTTCGACGGCGCACTCGCCCAGATCAACAAGCACCTAAGCACTGTAGAGGACCCTTTAATCCGCGCGAAATGGATGAACGTAAAGAAAGCACTTTCGGAAGAAACAGAAGTTGTAAAACAGCTAGATGCAGAGAGAAGGGCTTTCAAAGACAACCCCATTGGAAGACGCCCTTCTTCGCCTCCCATTTCGGTCAAGTCATCATCGTCTTTCGTTTTCCAGCCGTTGGATGAGTACCCTACTTCATCCAGCGGTCCTGGTCCCGTTGATGATCCCGATGTGTGGCGGCCGCCCAGCAGGGACACCACGAGCCGCAGACCGGCGCGTCCCGGCCAAGTCGGTGCTCGGAAATCGGCTCAAGACGGGGCTTGGGCGCGTGGCGCTACAGCCAGAACTGGTGCCGCTGGGCGTGGTGCTAAGGCTGGCGCTACCGGTAGGGTTAACTCCGGGACGCGAGCGTCGACGACTACCGGGAAGAAGGGTGGTGCTGCTTCTTCTGGAAAGGCTAGCAAGACAGATACTGCTGCTGCAGCTGTAACTAATGGTGATGCTGAAGATGGTAAGTCAAAGAAGCTTCAATATGAAGGTCCTGATCCTGAATTGGCTGCAATGCTTGAAAGGGACGTGTTAGAAACCTCTCCTGGAGTCAGATGGGATGATGTTGCAGGGCTTACTGAAGCAAAAAGGCTTCTAGAAGAAGCTGTTGTTCTTCCCTTGTGGATGCCTGAATATTTCCAGGGAATCAGGAGACCGTGGAAAGGTGTCCTCATGTTTGGACCTCCAGGAACTGGGAAGACACTTCTTGCTAAAGCAGTTGCTACTGAATGTGGGACCACTTTCTTTAATGTATCTTCTGCTACTTTAGCTTCTAAATGGCGTGGGGAGAGTGAGCGCATGGTGAGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGCACAATATTCATTGATGAAATTGATTCTCTATGCAATTCTAGGGGGGCTTCTGGTGAGCATGAATCGTCCAGAAGGGTGAAGTCTGAACTTCTAGTTCAGGTTGATGGTGTAAGCAATAGTGCCACAAATGAGGATGGTAGCCGTAAAATAGTAATGGTTTTGGCCGCTACTAACTTCCCTTGGGATATAGATGAGGCACTAAGGAGAAGGCTGGAAAAGCGTATATATATCCCTCTTCCAAATTTTGAGAGTCGTAAAGAACTGATCCGGATCAATTTGAAGACTGTTGAGGTGGCACCTGATGTCAATATAGACGAAGTGGCTCGCCGGACAGAGGGATATAGTGGAGATGATTTGACAAATGTCTGTCGCGATGCTTCCTTGAATGGTATGAGGCGCAAGATAGCAGGAAAGACTCGTGATGAAATCAAGAACATGTCCAAGGATGATATTTCAAAGGATCCTGTTGCCAAGTGTGATTTTGAAGAAGCTTTGAGAAAGGTCCAACGAAGTGTTTCTCAGGCTGACATTGAACGCCATGAGAAGTGGTTTACCGAATTTGGATCAGCATAA 1602 0.4906 MVGGSLAGLQEHLKLARDYALEGLYDTSIIFFDGALAQINKHLSTVEDPLIRAKWMNVKKALSEETEVVKQLDAERRAFKDNPIGRRPSSPPISVKSSSSFVFQPLDEYPTSSSGPGPVDDPDVWRPPSRDTTSRRPARPGQVGARKSAQDGAWARGATARTGAAGRGAKAGATGRVNSGTRASTTTGKKGGAASSGKASKTDTAAAAVTNGDAEDGKSKKLQYEGPDPELAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNSRGASGEHESSRRVKSELLVQVDGVSNSATNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAPDVNIDEVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDDISKDPVAKCDFEEALRKVQRSVSQADIERHEKWFTEFGSA* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1730 533 ProSitePatterns AAA-protein family signature. 394 413 IPR003960 GO:0005524|GO:0016887
Gso8g1730 533 Gene3D - 243 524 IPR027417 -
Gso8g1730 533 MobiDBLite consensus disorder prediction 105 225 - -
Gso8g1730 533 Gene3D - 4 80 - -
Gso8g1730 533 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A1 4 533 - -
Gso8g1730 533 CDD AAA 279 422 - -
Gso8g1730 533 PANTHER AAA DOMAIN-CONTAINING 4 533 - -
Gso8g1730 533 SMART AAA_5 281 424 IPR003593 -
Gso8g1730 533 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 245 529 IPR027417 -
Gso8g1730 533 MobiDBLite consensus disorder prediction 177 207 - -
Gso8g1730 533 MobiDBLite consensus disorder prediction 79 98 - -
Gso8g1730 533 Pfam ATPase family associated with various cellular activities (AAA) 285 422 IPR003959 GO:0005524|GO:0016887
Gso8g1730 533 Coils Coil 62 82 - -
Gso8g1730 533 Pfam Vps4 C terminal oligomerisation domain 486 531 IPR015415 -
Gso8g1730 533 Gene3D - 423 509 - -
Gso8g1730 533 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 7 533 IPR028596 GO:0008017|GO:0008568|GO:0051013
Gso8g1730 533 Pfam AAA+ lid domain 444 485 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1730 Gso-Chr8 16926026 16930176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1730 237 525 Calmodulin-binding Proteins AT3G56690 39.933 4.51e-50 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1730 K07767 - gmx:100820625 951.044
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0114 15 981174 984616 Gso8g1730 8 16926026 16930176 PCT
Gso8g1730 8 16926026 16930176 Gso15g0114 15 981174 984616 PCT