Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1728 ATGGCCAAAGAAGGTCTTGGACTTGAAATCACTGAGCTAAGGTTGGGTCTACCTGATGCGGAGCATCAAGTAAGTGTGGTCAATAAGAAAAATGAGAAGAAGAGGGCATTCTCGGAAATTGATGATGGTGTTGGAGATGAAAATAGCTCCTCCGGCGGAGGCGACCGGAAAATGGAGACGAATAAGAGTCAAGTGGTGGGGTGGCCTCCGGTGTGCTCTTACCGGAAGAAGAACAGCATGAACGAAGGTGCTTCAAAGATGTACGTGAAGGTTAGCATGGACGGTGCTCCTTTCTTGCGTAAAATTGATTTGGGTCTGCATAAGGGCTACTCAGATTTAGCTTTGGCTTTGGACAAGCTCTTTGGTTGCTATGGAATGGTGGAGGCGTTGAAAAATGCAGACAATTCTGAACACGTTCCCATTTATGAGGACAAAGATGGTGATTGGATGCTTGTTGGAGATGTCCCTTGGGAAATGTTTATGGAGTCATGCAAGAGGCTGAGGATTATGAAGAAATCAGATGCGAAGGGCTTCGGTTTGCAACCAAAAGGATCTTTAAAGGGATTCATAGAAAGCGCGGCAAAGTGA 588 0.4592 MAKEGLGLEITELRLGLPDAEHQVSVVNKKNEKKRAFSEIDDGVGDENSSSGGGDRKMETNKSQVVGWPPVCSYRKKNSMNEGASKMYVKVSMDGAPFLRKIDLGLHKGYSDLALALDKLFGCYGMVEALKNADNSEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKKSDAKGFGLQPKGSLKGFIESAAK* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1728 195 MobiDBLite consensus disorder prediction 37 60 - -
Gso8g1728 195 Gene3D - 81 183 - -
Gso8g1728 195 SUPERFAMILY CAD & PB1 domains 82 171 - -
Gso8g1728 195 PANTHER AUXIN-RESPONSIVE PROTEIN IAA6 4 178 - -
Gso8g1728 195 Pfam AUX/IAA family 54 178 IPR033389 -
Gso8g1728 195 ProSiteProfiles PB1 domain profile. 86 174 IPR000270 GO:0005515
Gso8g1728 195 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 178 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1728 Gso-Chr8 16884004 16888296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1728 69 176 B3 DNA Binding Superfamily AT4G23980 35.185 3.43e-11 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Gso8g1728 AUX_IAA 4.4e-45 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1728 K14484 - gmx:547784 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g1728 8 16884004 16888296 Gso15g0118 15 1016947 1020568 PCT
Gso8g1728 8 16884004 16888296 Gso11g3686 11 52494283 52497500 PCT