Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1683 ATGTGCCTGGGGCTCCAAGAAACCAAAAACATTCCCACCATTCTTAACTTCACTCACTTACAAATCACAATGACACAACAAGCAACAACCTCTTCCGAAACAACAACTTCCTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCACATTTTCACCCTCGCAGCATTCGGGCCCAAAGGCCCAGGCCCAGAAACAGAGCAAGAGGCCCAGGGACTGCAGCAAGCACCCGGTGTACCACGGCGTGCGGAAGCGCAACTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCACGCAAGAAGTCCCGAATCTGGCTCGGAACATTCGCCACTCCTGAAATGGCGGCGCGAGCCCACGACGTGGCGGCTCTCACCATCAAGGGCGAGTCAGCAATCCTCAATTTCCCCGAAATTGCGGACCTGCTCCCCAGGCCCGTCACGTGCGCTCCACGTGACATCCAGGCTGCGGCCACGGCCGCGGCCTCCATGGTTAAATTCGACCCCGTGACGCAATCCTCGGACTCGGAGACTCCGGAGTCTTCGGAGCTGAGCGAGATTGTTGAACTTCCCAACATTGAAGACAGCAGCTTTGACTCCGTTGACTCCAGACCGGAGTTCGTGTTGGTCGATGTTGTTGACGGTTGGGTGTTTCCGCCAATGGGAATGGGGTCAGAGGGAATCGAGATCTGTGCCGCTTTTTCTGATGAGTTGTTTCCGCAACAGAGTTTTGTTGATGAGATAGAGATACTACCCATTTGGGATTGA 756 0.5503 MCLGLQETKNIPTILNFTHLQITMTQQATTSSETTTSSSSSSSSSSSTFSPSQHSGPKAQAQKQSKRPRDCSKHPVYHGVRKRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALTIKGESAILNFPEIADLLPRPVTCAPRDIQAAATAAASMVKFDPVTQSSDSETPESSELSEIVELPNIEDSSFDSVDSRPEFVLVDVVDGWVFPPMGMGSEGIEICAAFSDELFPQQSFVDEIEILPIWD* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1683 251 ProSiteProfiles AP2/ERF domain profile. 76 133 IPR001471 GO:0003700|GO:0006355
Gso8g1683 251 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 40 233 - -
Gso8g1683 251 Gene3D AP2/ERF domain 76 135 IPR036955 GO:0003700|GO:0006355
Gso8g1683 251 SMART rav1_2 76 139 IPR001471 GO:0003700|GO:0006355
Gso8g1683 251 MobiDBLite consensus disorder prediction 26 76 - -
Gso8g1683 251 CDD AP2 77 134 IPR001471 GO:0003700|GO:0006355
Gso8g1683 251 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Gso8g1683 251 PRINTS Ethylene responsive element binding protein signature 99 115 IPR001471 GO:0003700|GO:0006355
Gso8g1683 251 MobiDBLite consensus disorder prediction 26 62 - -
Gso8g1683 251 Pfam AP2 domain 75 125 IPR001471 GO:0003700|GO:0006355
Gso8g1683 251 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 40 233 - -
Gso8g1683 251 SUPERFAMILY DNA-binding domain 76 133 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1683 Gso-Chr8 16500010 16501350 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1683 60 216 AP2-EREBP Transcription Factor Family AT5G11590 56.497 9.23e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso8g1683 AP2 4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1683 K09286 - gmx:100801780 473.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0146 7 1403769 1405005 Gso8g1683 8 16500010 16501350 GST