Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1678 ATGTCCTGCAAGGATGGTAGCAGAAACGGAATCGGAATGGATAACGGGAAGTATGTCCGTTACACGCCTGAGCAGGTTGAAGCCCTAGAAAGGCTCTATCACGATTGCCCCAAACCTAGTTCCATTCGCCGCCAGCAGCTCATTCGCGAGTGCCCTATTCTCTCCAACATTGAGCCCAAACAAATCAAGGTTTGGTTCCAGAACAGAAGATGTAGAGAGAAGCAGAGGAAGGAGTCGTCGCGGCTGCAAGCTGTAAATAGGAAGTTGACTGCCATGAACAAGTTGCTCATGGAGGAGAATGATAGGTTGCAGAAGCAGGTCTCTCAACTCGTCTATGAAAATGGCTATTTTCGTCAACACACCCAGATTACAACGCAGGCAACCAAAGACACAAACTGTGAATCAGTTGTGACGAGTGGTCAGCACAATTTGACAACTCAACATCCCCCACGGGATGCAAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAGACTTTAGCAGAATTTCTTTCTAAGGCTACTGGGACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCTAGAGCCTGTGGTCTAGTGGGACTAGAACCCACTAGGGTTGCAGAAATCCTCAAAGATCGGCCTTTGTGGTTTCGTGATTGCCGAGCTGTTGATGTTCTCAATGTTCTGCCCACAGCAAATGGTGGAACCATTGAGCTGCTTTATATGCAGCTATATGCACCAACCACATTGGCTCCTGCTCGTGACTTCTGGTTGTTGCGCTACACTTCTGTTTTAGAAGATGGAAGCCTAGTGATCTGTGAGAGGTCTCTTAAAAATACTCAAAATGGTCCAAGCATGCCTCCTGTGCAGCATTTTGTTAGGGCAGAGATGCTGCCTAGTGGGTACCTGATCAGACCTTGTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCATATGGATTTAGAGCCATGGAGTGTGCCAGAAGTGCTACGCCCACTGTACGAATCATCAACAGTACTGGCTCAGAAGACAACTATGGCAGCCCTACGTCATCTAAGGCAGATTTCACATGAAGTTTCTCAGTCCAATGTCACTGGGTGGGGTAGACGACCAGCGGCACTACGAGCTCTTAGCCAAAGATTGAGCCGGGGTTTCAATGAGGCACTCAATGGATTTACCGATGAGGGATGGACAACAATTAGCAATGATGGTGTAGATGATGTTACTATTCTAGTGAATTCATCCCCTGACAAGTTAATGGGTCTGAATCTTTCCTTTGCCAATGGATTTCCGTCTGTCAGTAATGCAGTGCTATGTGCCAAAGCATCCATGCTATTACAGAATGTGCCCCCTGCCATTCTCCTAAGATTCCTGCGGGAGCATAGATCAGAATGGGCAGACAACAATATGGATGCTTACACAGCTGCTGCTATTAAAGTTGGCCCTTGCAGCCTATCAGGATCCTGTGTTGGAAACTTTGGCGGTCAAGTTATACTCCCCCTAGCACACACAATTGAGCATGAGGAGTTTTTGGAAGTCATTAAATTGGAAGGAATAGCTCATTCTCCTGAAGACACAATAATGCCCAGAGAAATGTTTCTTTTGCAACTCTGCAGTGGAATGGATGAGAATGCTGTTGGCACCTGTGCTGAACTTATATCTGCTCCAATTGATGCTTCGTTTGCTGATGATGCCCCCCTTCTACCTTCTGGATTTCGCATCATTCCTCTTGAATCTGGAAAGGAAGCTTCCAGCCCCAATCGTACACTTGACCTTGCATCTTCCCTTGACGTTGGTCCCAGTGGAAACCGAGCTTCAAATGGATCTGCTGGAAATTCCAGCTGTATGAGATCTGTGATGACAATAGCATTTGAATTTGCATTTGAAAGCCATATGCAAGAGCATGTAACATCTATGGCACGCCAATATGTTCGGAGCATTATATCATCAGTCCAAAGGGTAGCATTAGCACTTTCTCCTTCTCATTTGAGTTCACATGCAGGGCTTAGGTCACCATTGGGTACTCCTGAAGCACAAACCCTTGCTCATTGGATCTGCAACAGTTATAGGTGCTACTTGGGTGTGGAGCTACTTAAATCTAATAACGAGGGGAATGAATCTTTGCTCAAGTCCTTGTGGCATCACTCTGATGCAATATTGTGCTGCACTCTAAAGGCATTGCCAGTGTTCACTTTCTCGAACCAGGCCGGGCTTGACATGCTAGAGACCACCCTAGTTGCATTACAAGATATAACTTTAGAGAAAATATTTGATGATCATGGACGAAAAATTCTCTTTTCAGAGTTTCCACAGATTATACAACAGGGTTTTGCATGTCTTCAAGGTGGTATTTGTCTTTCAAGCATGGGGCGACCTGTCTCGTACGAAAGAGTTGTTGCTTGGAAGGTGCTGAATGAAGAAGAGAATGCTCATTGTATTTGCTTTATGTTTGTGAACTGGTCTTTTGTTTGA 2517 0.4589 MSCKDGSRNGIGMDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQITTQATKDTNCESVVTSGQHNLTTQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPLWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPSMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALRHLRQISHEVSQSNVTGWGRRPAALRALSQRLSRGFNEALNGFTDEGWTTISNDGVDDVTILVNSSPDKLMGLNLSFANGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYTAAAIKVGPCSLSGSCVGNFGGQVILPLAHTIEHEEFLEVIKLEGIAHSPEDTIMPREMFLLQLCSGMDENAVGTCAELISAPIDASFADDAPLLPSGFRIIPLESGKEASSPNRTLDLASSLDVGPSGNRASNGSAGNSSCMRSVMTIAFEFAFESHMQEHVTSMARQYVRSIISSVQRVALALSPSHLSSHAGLRSPLGTPEAQTLAHWICNSYRCYLGVELLKSNNEGNESLLKSLWHHSDAILCCTLKALPVFTFSNQAGLDMLETTLVALQDITLEKIFDDHGRKILFSEFPQIIQQGFACLQGGICLSSMGRPVSYERVVAWKVLNEEENAHCICFMFVNWSFV* 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1678 838 SUPERFAMILY Bet v1-like 160 370 - -
Gso8g1678 838 SUPERFAMILY Bet v1-like 397 596 - -
Gso8g1678 838 Gene3D - 12 83 - -
Gso8g1678 838 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 838 IPR044830 GO:0003700
Gso8g1678 838 Gene3D - 195 376 IPR023393 -
Gso8g1678 838 Pfam START domain 161 369 IPR002913 GO:0008289
Gso8g1678 838 SUPERFAMILY Homeodomain-like 16 78 IPR009057 -
Gso8g1678 838 Coils Coil 82 113 - -
Gso8g1678 838 MobiDBLite consensus disorder prediction 597 626 - -
Gso8g1678 838 Pfam MEKHLA domain 695 837 IPR013978 -
Gso8g1678 838 SMART START_1 160 370 IPR002913 GO:0008289
Gso8g1678 838 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 838 - -
Gso8g1678 838 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677
Gso8g1678 838 SMART HOX_1 14 80 IPR001356 GO:0003677
Gso8g1678 838 Pfam Homeodomain 17 75 IPR001356 GO:0003677
Gso8g1678 838 CDD bZIP 69 108 - -
Gso8g1678 838 CDD START_ArGLABRA2_like 155 370 - -
Gso8g1678 838 CDD homeodomain 17 77 IPR001356 GO:0003677
Gso8g1678 838 ProSiteProfiles START domain profile. 151 365 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1678 Gso-Chr8 16438682 16446630 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1678 1 790 Homeobox Transcription Factor Family AT1G52150 84.741 0.0 1393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso8g1678 START 1.4e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1678 K09338 - gmx:100800165 1664.82