Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1666 ATGTGGCAAAGAAGCCACAAGTCATCAGAGGAGAGAAAGCTGGAGCTTAGGCTTGGTCCACCTGGTGAAGAGTCTCTCAATGAAAGCATCAGAAAAAGCAACAGAGAAAGAAATGAATCACAATTCACTCTTGGTTGCTTCTCAACTCAAAATTTTTTTACTTCTGACAAGCAAGGTCCAGGTGGGACTACGTTGCCCTCTGCATGGCCTTCCACATCCTATCATCACCAACACCAGGCTAAAGCTAAAGCTTCATCATTTCTTCAGCTCCAATCAAGTCCACAAAACATGATAGTGATGGGAAAGGATGTGTCACAATTCTCTTGTGTAGAGAAGAAGGTATTCTCACCCTCTTGTGCAAATCCAGCGGTGTCCAAAAGAACTTCTTCAGGTCCAGCAGTGGGTTGGCCTCCAATTCGTTCCTTCAGGAAGAACATTGCAAGTGGAAGCACTTCTAAGTTGCCTTCTGGGTCCCACCAGCAACATCAAAATGTTGTTCCATACAAGGTTGCTAGCCAAAAACCTACTGACAAATCTGGTAAAGGCTTGTTTGTGAAGATCAATATGGATGGTGTCCCCATTGGGAGAAAAGTGGACATCAATGCTTATGACAGCTATGAAAAACTTTCCTCTGCTGTTGATGAGCTCTTTAGGGGCCTCCTTGCAGAGATGAAGTTATCTCATATTGGCTCTTCCCAATGCTGTTCTGGTCAAAGAGATTCCTGTGCTGGTGGAATTCAAAACAAGGAACAGGAAGAGAAATCCAATAAGGGTTTATTGGTTGGAAGTGGGGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGAGATGTGCCGTGGCACATGTTTGTATCGACGGTGAAGAGGCTGAGGGTGTTGAAGAGTTCTGATCTTCCTGCTTTTACACTTGGTAGTAAGCAAGACTAG 942 0.4406 MWQRSHKSSEERKLELRLGPPGEESLNESIRKSNRERNESQFTLGCFSTQNFFTSDKQGPGGTTLPSAWPSTSYHHQHQAKAKASSFLQLQSSPQNMIVMGKDVSQFSCVEKKVFSPSCANPAVSKRTSSGPAVGWPPIRSFRKNIASGSTSKLPSGSHQQHQNVVPYKVASQKPTDKSGKGLFVKINMDGVPIGRKVDINAYDSYEKLSSAVDELFRGLLAEMKLSHIGSSQCCSGQRDSCAGGIQNKEQEEKSNKGLLVGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSDLPAFTLGSKQD* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1666 313 MobiDBLite consensus disorder prediction 1 19 - -
Gso8g1666 313 ProSiteProfiles PB1 domain profile. 182 300 IPR000270 GO:0005515
Gso8g1666 313 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 3 312 - -
Gso8g1666 313 MobiDBLite consensus disorder prediction 1 37 - -
Gso8g1666 313 SUPERFAMILY CAD & PB1 domains 178 297 - -
Gso8g1666 313 Gene3D - 177 311 - -
Gso8g1666 313 Pfam AUX/IAA family 14 303 IPR033389 -
Gso8g1666 313 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 312 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1666 Gso-Chr8 16308908 16312104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1666 186 311 B3 DNA Binding Superfamily AT4G23980 28.571 1.63e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gso8g1666 AUX_IAA 1.7e-66 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1666 K14484 - gmx:100793822 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0129 7 1207565 1211087 Gso8g1666 8 16308908 16312104 GST
Gso15g0186 15 1588841 1592613 Gso8g1666 8 16308908 16312104 PCT
Gso11g3628 11 51942326 51946436 Gso8g1666 8 16308908 16312104 PCT
Gso8g1666 8 16308908 16312104 Gso15g0186 15 1588841 1592613 PCT
Gso8g1666 8 16308908 16312104 Gso11g3628 11 51942326 51946436 PCT