Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1643 ATGAATGATGCTAGCCTGGATCAAAATCCAAATCTATGTGAATCTGATCCATGCATCCAGCAGACAAATAACAAGCAGCCAGATGGTGATCAACAGAAGAACAAAAATAATATAGTTATCCCGGTAGTATCATCAGTTGCTGGGGTTTTGGTGCTCCTAATAATTGTAGCAGCAGCTATAATCTGTGGCCTTAAAAGGAAAAAACCACAAGCATCTGATGTGAACATTTATGTTGAGACCAACACTCCAAATGGATCACAATTTGCATCCAAGCAACGGCAATATACATTCAATGAGCTTGTTAAGATCACCAACGACTTTACCAGAATTCTTGGTAGAGGTGGATTTGGAAAAGTTTATCATGGATTTATTGATGACACTCAAGTAGCTGTAAAGATGCTTTCTCCGTCAGCAGTACGAGGATATGAACAATTCCTAGCAGAGGTTAAACTTCTGATGAGAGTTCATCATAGAAATCTGACTTCTCTTGTTGGGTATTGCAATGAAGAAAACAACATAGGGCTCATCTATGAATATATGGCAAATGGAAACTTGGATGAAATTGTTTCAGGAAAAAGTAGTAGGGCAAAGTTCTTGACATGGGAAGACAGACTCCAAATAGCATTGGATGCAGCCCAAGGACTGGAATATCTGCATAACGGTTGTAAGCCACCAATAATCCACAGAGATGTGAAATGTGCAAATATTTTATTAAATGAAAACTTCCAAGCAAAATTGGCTGATTTTGGGCTATCCAAAAGCTTTCCCACAGATGGGGGATCTTATATGTCCACTGTTGTTGCTGGAACTCCCGGTTATTTGGATCCCGAGTACAGCATATCAAGCAGATTGACAGAGAAAAGTGATGTTTACAGCTTCGGAGTTGTTCTTTTGGAGATGGTCACAGGTCAGCCAGCTATTGCAAAAACACCTGATAAGACTCACATAAGTCAGTGGGTTAAATCCATGCTTTCCAATGGGGATATAAAAAATATTGCTGACTCAAGGTTTAAGGAAGATTTTGACACTAGCTCAGTCTGGAGAATTGTTGAAATCGGAATGGCTTCTGTGTCCATTAGTCCTTTCAAAAGGCCAAGTATGAGCTATATAGTGAACGAGCTAAAGGAGTGTTTGACGACAGAATTAGCTCGAAAATATAGTGGTCGTGACACTGAAAACAGTGACTCAATTGAGTTGGTCACTCTGAATTTCACAACTGAACTTGGTCCCCCAGCTAGGTAA 1242 0.3977 MNDASLDQNPNLCESDPCIQQTNNKQPDGDQQKNKNNIVIPVVSSVAGVLVLLIIVAAAIICGLKRKKPQASDVNIYVETNTPNGSQFASKQRQYTFNELVKITNDFTRILGRGGFGKVYHGFIDDTQVAVKMLSPSAVRGYEQFLAEVKLLMRVHHRNLTSLVGYCNEENNIGLIYEYMANGNLDEIVSGKSSRAKFLTWEDRLQIALDAAQGLEYLHNGCKPPIIHRDVKCANILLNENFQAKLADFGLSKSFPTDGGSYMSTVVAGTPGYLDPEYSISSRLTEKSDVYSFGVVLLEMVTGQPAIAKTPDKTHISQWVKSMLSNGDIKNIADSRFKEDFDTSSVWRIVEIGMASVSISPFKRPSMSYIVNELKECLTTELARKYSGRDTENSDSIELVTLNFTTELGPPAR* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1643 413 Gene3D Phosphorylase Kinase; domain 1 91 179 - -
Gso8g1643 413 CDD STKc_IRAK 111 376 - -
Gso8g1643 413 Pfam Protein tyrosine and serine/threonine kinase 107 374 IPR001245 GO:0004672|GO:0006468
Gso8g1643 413 ProSitePatterns Protein kinases ATP-binding region signature. 111 132 IPR017441 GO:0005524
Gso8g1643 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672|GO:0006468
Gso8g1643 413 SMART serkin_6 105 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1643 413 MobiDBLite consensus disorder prediction 1 33 - -
Gso8g1643 413 PANTHER OS07G0107800 PROTEIN-RELATED 6 413 - -
Gso8g1643 413 SUPERFAMILY Protein kinase-like (PK-like) 86 374 IPR011009 -
Gso8g1643 413 Gene3D Transferase(Phosphotransferase) domain 1 180 398 - -
Gso8g1643 413 ProSiteProfiles Protein kinase domain profile. 105 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1643 413 PANTHER PUTATIVE-RELATED 6 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1643 Gso-Chr8 16062682 16064843 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1643 33 413 Receptor kinase-like Gene Family AT1G51880 54.593 6.80e-142 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Gso8g1643 PK_Tyr_Ser-Thr 7.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1643 - - gmx:100779474 783.482