Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1641 ATGGATGGTCTTAGTTGGGATGCCTCACAACTGTGGAGTACTATTCAGCAACCACCAGACTTTGAAGGAGGCTACTCCATGCCCCCCAATGTTCTCAATCAAATACAAGAGATGCAGAAAGCTCAAACAGGTCATGCATATTCAAATTCTGAAAGAGGGATTTATCACTCGGCAGGTGCCACTACCACTTCCTCTGAGATGATGGATGTGATGCAAAAACAAGACACAAATCTATCACAGCATGTGTCAATCATGCAAGTGAAACCAGCTGGAGCTGGAGCCAGTTGGGGAGAAACTTTAACATCCCAATCATACCCATCCCTATCAGTCAATAGACCTCACAGTATGAACCTGATTAGCAACTACATGCCAGATTTCTACATGGCCCACCAACAACAGCAGCAGCAACAACAACAACAACAACTTGAGTCTTTTGACTGCTTGATTTCAGCTACCAACAGCAACACAGACATCACTTCTGTTGAAGATGATGATGGGATCTCAATGATTTTATCTGACTGTGGAAACCTGTGGAGCAACTTCAGTTATGGCAGTGCAGCTTCCACAGGTGAGTCTGAGAGCAATGCTTCCAATGGTAGAAACAAAGACATGCAGTGTAGTCCAGTCAATATTGAAGTTGATGAAACAGTTTCTCAAACAGTGGAATCAGAGGCTAATTGTTCAAAGAGGAGTCATGCCCATGATCAATCTAAAATGATCAAAGTTGGTGATTCCTGCTTCAGTATTGTTCAAAATTCTTCTCCTATTGAAGAAGGTGGTTTCAGACTTGTCTCAGATATTAATCAACCAGAATGCAAGAAATCAAGATGGGATATGAGTTCCTCCTCAAATAATATCAATTTCCAGCAACCAAATTCATCCATTTCTTCTTCCATTGAAGAGCCTGATCCAGAGGCAATTGCACAAATGAAGGAAATGATATATAGGGCTGCAGCTTTTAGGCCAGTGAACTTTGGGTTGGAGGTGGCTGAAAAGCCGAAGAGGAAGAATGTGAAGATATCAACTGATCCACAAACTGTGGCTGCAAGGCACAGAAGGGAGAGAATAAATGAGAAGATTAGGGTTTTGCAGAAGCTTGTGCCTGGGGGAAGCAAGATGGACACAGCATCAATGCTTGATGAGGCTGCAAACTACCTCAAGTTTCTCAGGTCACAGGTGAAGGCACTGGAAAGTCTAGGAAACAAAGTTGATGCAATGAATTGTCCTCCTACTAGCATTGCCTTCTCTTTCAACCCTTCTTTTCCCATGCAAACACCACCCCTCTGTCACATCCATCATTCCCATGGAGTCAAACAAAACAACCCCGCATGA 1332 0.4317 MDGLSWDASQLWSTIQQPPDFEGGYSMPPNVLNQIQEMQKAQTGHAYSNSERGIYHSAGATTTSSEMMDVMQKQDTNLSQHVSIMQVKPAGAGASWGETLTSQSYPSLSVNRPHSMNLISNYMPDFYMAHQQQQQQQQQQQLESFDCLISATNSNTDITSVEDDDGISMILSDCGNLWSNFSYGSAASTGESESNASNGRNKDMQCSPVNIEVDETVSQTVESEANCSKRSHAHDQSKMIKVGDSCFSIVQNSSPIEEGGFRLVSDINQPECKKSRWDMSSSSNNINFQQPNSSISSSIEEPDPEAIAQMKEMIYRAAAFRPVNFGLEVAEKPKRKNVKISTDPQTVAARHRRERINEKIRVLQKLVPGGSKMDTASMLDEAANYLKFLRSQVKALESLGNKVDAMNCPPTSIAFSFNPSFPMQTPPLCHIHHSHGVKQNNPA* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1641 443 SMART finulus 346 395 IPR011598 GO:0046983
Gso8g1641 443 Coils Coil 379 399 - -
Gso8g1641 443 Pfam Helix-loop-helix DNA-binding domain 350 389 IPR011598 GO:0046983
Gso8g1641 443 PANTHER TRANSCRIPTION FACTOR BHLH87 68 431 - -
Gso8g1641 443 CDD bHLH_AtIND_like 341 399 - -
Gso8g1641 443 Gene3D - 345 401 IPR036638 GO:0046983
Gso8g1641 443 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 345 402 IPR036638 GO:0046983
Gso8g1641 443 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 340 389 IPR011598 GO:0046983
Gso8g1641 443 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 68 431 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1641 Gso-Chr8 16040751 16042934 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1641 91 433 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 48.753 2.87e-87 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso8g1641 HLH 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1641 - - gmx:100775192 842.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0117 7 1060549 1062438 Gso8g1641 8 16040751 16042934 GST
Gso15g0197 15 1744886 1747534 Gso8g1641 8 16040751 16042934 PCT
Gso11g3616 11 51840617 51843175 Gso8g1641 8 16040751 16042934 PCT
Gso8g1641 8 16040751 16042934 Gso15g0197 15 1744886 1747534 PCT
Gso8g1641 8 16040751 16042934 Gso11g3616 11 51840617 51843175 PCT