Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1621 ATGGAAAGTAATCATGGAAAAGTTGTTGTAGCTGCCGCATTATCAAATAAGTCGGTACCATTAATGAAGAAGGAATTTTCTTGCAAGTATTGCAATAAGAAGTTCAGTAGTTACCAAGCCTTGGGTGGGCATCATAATGCTCACAAGGCTGAAAGAGAAGCAGAAAAACAAAACAAGATTCTTAGCAACGCTTCTGCTTATTATAAAAAATCATTTGTTGGTTGGTTTGTTTATTCAAACCATAATGCTTATGGTTATGGGTTTGGTGGCAAAACATTAGGGGTTTCACCACTATCCATGACTCGTTTTAAGCCCTTCTATTATATGAGTGTCACACGTGACTATCAACATGTTACTGCATGA 363 0.3691 MESNHGKVVVAAALSNKSVPLMKKEFSCKYCNKKFSSYQALGGHHNAHKAEREAEKQNKILSNASAYYKKSFVGWFVYSNHNAYGYGFGGKTLGVSPLSMTRFKPFYYMSVTRDYQHVTA* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1621 120 ProSiteProfiles Zinc finger C2H2 type domain profile. 26 53 IPR013087 -
Gso8g1621 120 PANTHER ZINC FINGER PROTEIN JAGGED 18 108 IPR045320 GO:0003700
Gso8g1621 120 Gene3D Classic Zinc Finger 7 75 - -
Gso8g1621 120 ProSitePatterns Zinc finger C2H2 type domain signature. 28 48 IPR013087 -
Gso8g1621 120 SUPERFAMILY beta-beta-alpha zinc fingers 23 53 IPR036236 -
Gso8g1621 120 PANTHER ZINC FINGER PROTEIN KNUCKLES 18 108 - -
Gso8g1621 120 Pfam C2H2-type zinc finger 26 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1621 Gso-Chr8 15855715 15856077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1621 20 107 C2H2 Transcription Factor Family AT5G14010 35.417 5.38e-11 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso8g1621 zf-C2H2_6 4e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1621 - - gsj:114423945 252.292