Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1613 ATGGCTTACTTTGGGAACATAATAGATGATTTCTCAGGGATTTGTCTGAAGGATTTTGATTTCACTTCTTTCTGTTCTCAAAGGACCACAATAGATGCTATAAATCTACTTTTTATCTGTGTCTTCTACACCTCTATGATTATCAGTTTAATGAGAAGAAATTCTCAGTGTGGTAGTCCCAGCAAAAGCAGGTTTTTCATTCTTGTCTCTATCTGCTGTGCTATTATTAGCATTGTGTTTTACAGTATTGGCTTGAGAAATCTCATAGCCAAAACTGATAACTCTAAGCAGCTGAACTGGTTAGCTTGCATTGTCAGAGGATTCATTTGGACTTCTTTGGCAGTTTCTTTGCTTGTTCAGAGACTCAAATGGATCAAAATTCTTAACTCTGTCTGGTGGGCATGTTCCTGTGTACTGGCTTCAGTTCTAAACATTGAAATTCTGTTTAAAAAGCAAGCAATAGAAATTTTTGATGTCATACAATGGTTTTTACACTTTCTTCTTCTCTTCTGTGCCTTCCAAAATCTTGGTTACTTTGTCTCTCAAAGTGTGCCACAAAGTTTATCTGAGCCACTCTTAGACCAAGAAGTTGACACTAAACAAACAGGACTAGGCCGTGCTAACTTTCTCAGCAAATTGACTTTCTCTTGGATTAATTCCTTACTCAGTCTTGGTTACTCAAAGTCACTAGTTCTTGAAGACATCCCTTCCCTTCTTTCTGAAGATGAAGCAAACTTAGGCTACCAAAACTTTATGCATGCATGGGAATCCCTTGTAAGGGAGAGGAGCAAGACCAATACCAAAAACTTGGTTCTTTGGTCTGTTGTTAGAACTCACTTAAAAGAGAACATATTAATAGCTTTTTGGGCACTACTCAGAACCTTTGCCGTTTCTGTTTCTCCTTTAATACTCTATGCTTTTGTAAACTACTCAAATAGTAGGGATGCCAAGAATACAAATCTCAAAGAAGGTCTTTCCATAGTTGGTTTTCTTATTCTCTCCAAAGTGGTTGAATCTTTGTCCCAGAGACATTGGTTTTTTTATTCCAGGAGGTCAGGATTGAGGATGAGATCAGCTCTGATGGTTGCAGTGTATAGAAAACAGCTAAAGCTTTCTAGCTCAGCAAGGAGAAGGCACTCAGCAGGTGAAATTGTGAATTACATTGCAGTTGATGCGTATCGTATGGGAGAATTTCCATGGTGGTTTCATATAGCATGGACATCTACATTGCAACTTGTCCTATCTATTGGTATCCTTTTCGGTGTTGTGGGTGTTGGTGTTCTTCCTGGTTTAGTCCCTCTTCTTATATGTGGACTTATCAATTTTCCATTTGCCAAAATCCTACAGAATTGTATGGCACAGTTCATGATTTCACAGGATGAGCGTCTTAGATCAACTTCAGAAATTCTAAATAGCATGAAAATCATTAAGTTACAATCCTGGGAGGACAAATTCAAGAATTTGGTTGAGAACCTACGTGCTAAAGAGTTCATCTGGCTGTCTAAGGCACAGATCATGAAAGCTTATGGTTCATTTCTATATTGGATGTCTCCTACCATTGTTTCAGCTGTTGTTTTCCTCGGCTGTGCTCTTTTCAATAGTGCCCCATTGAATGCTGGGACCATTTTCACAGTTCTTGCAATGTTGAGGAACTTGGGAGAACCTGTTCGAATGATTCCGGAGGCTCTTTCTATTATGATCCAAGTTAAGGTCTCCTTTGATCGTCTCAATACCATTTTGCTTGATGAAGAGCTAGACGGAAGCGATGGTAACAGAAGAAATATAAACCGAAGTTCAATAAATGCGGTGGAAATTCAAGCTGGTAACTTCGTTTGGGATCATGAATCAGTGTCCCCAACTTTAAGAGATTTGAATTTAGAAATCAAATGGGGACAGAAAGTTGCAGTTTGTGGACCAGTTGGAGCTGGAAAATCATCCCTTTTGTATGCTGTACTTGGAGAGGTTCCCAAGATCTCAGGAACTGTTAATGTGTGTGGCACCATAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGACAGTTCAAGATAATATACTCTTCGGCAAGCCAATGGACAAAACAAGATATGAGAATGCCATTAAAGTTTGTGCTTTAGATAAAGATATTGAAGACTTTAGCCATGGTGATCTTACAGAAATAGGTCAGCGAGGGATTAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTCGTGCAGTCTACAATGACGCTGACATCTATCTCCTCGATGACCCTTTCAGCGCAGTTGATGCTCACACTGCTGCTATTCTGTTCAATGACTGTGTAATGACGGCTCTAAGAGAAAAAACAGTCATTCTAGTGACTCATCAAGTGGAGTTTCTCTCAGAAGTTGATACGATCCTGGTAATGGAAGATGGAAAAGTTACTCAATCAGGCAATTACGAGAATCTCCTGACTGCTGGGACAGCCTTTGAACAACTTGTGAGGGCTCATAAGGAAGCAATTACAGAGTTGGATCAAAATAATGAAAAGGGAACTCATAAAGAAGAGTCTCAAGGTTATCTCACTAAAAACCAAAGTGAGGGAGAGATTTCTACCGAGGGTAAACTTGGGGTACAGCTTACCCAAGAAGAAGAAAAACAGATTGGTGATGTTGGCTGGAAGACATTCTGGGATTATATTTCATTTTCCAGGGGTTCATTGATGCTGTGTTGGATCATGTTGGGACAATCTGCTTTTATTGCTTTGCAGACTGCATCAATGTTTTGGCTTGCTCTAGCCATTGAAGTTCCAAAAATAACTAGCGCCATCTTGATTGGAGTTTATGCATTAATTTCATTTTCTAGTGCTGGGTTTGTATATGTAAGATCTCTCTTTACTGCTCACCTTGGGTTAAAAGCTTCTACAGCCTTCTTCAACAGTTTCACAACTGCTATCTTCAATGCTCCTATGTTGTTCTTTGACTCAACCCCTGTGGGAAGGATTTTAACCCGAGCTTCATCAGATTTAAGTATTTTGGACTTTGATATACCTTATTCCATCACCTTTGTAGCATCTGTAGGACTTGAAATAATGGTGACGATTTGTATAATGGCTTTAGTAACATGGCCAGTTCTCATTGTTGCCATTCCTGCAATGGTTGCATCAAAATATGTTCAGGGATATTATCAAGCCTCAGCAAGGGAATTAATGAGGATCAATGGAACCACAAAAGCTCCTGTCATGAATTTTGCAGCCGAGACATCACTTGGTGTGGTTACTGTAAGAGCATTTAACATGACAGAAATTTTTTTTAGGAATTACTTAAAGCTTGTGGACACAGACGCAGCACTGTTCTTTCATTCTAATGTGGCCATGGAATGGTTAGTTTTAAGGATTGAAGCACTTCAAAATTTGACGGTCATTACTTCAGCTTTGTTACTTATCATAGTTCCTCAGGGATATGTGACCTCAGGCCTTGTGGGACTGTCTCTCTCTTATGCTTTCTCCTTGACAGGATCTCAAATATTTTGGACTCGATGGTATTGCAACTTATTAAACTACATTATCTCTGTTGAAAGAATCAAGCAATTCATCCACCTACCAGTGGAGCCTCCAGCCATTTTGGAGGACCACCGGCCTCCATCTTCATGGCCTTCAAAAGGCAGGATTGATCTTCAAGCCTTAGAGATTAGATATCGTCCCAATGCTCCATTGGTGCTTAAGGGCATCACTTGTACTTTTAAAGAAGGTAGTAGAGTGGGAGTCGTAGGAAGGACTGGAAGTGGAAAAAGTACACTCATAAGTGCTTTGTTTCGCTTAGTTGATCCAGCAAAAGGTTATATTCTTATAGATGGGATTAACATATGCTCAATTGGGTTGAAGGATTTGAGAATGAAGCTAAGCATCATCCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGGACCAACTTGGACCCTCTAGGCCTGTACTCAGATGATGAAATATGGGAGGCTTTAGAGAAATGTCAGCTCAAGGAAACTATCAGCCGTCTACCAAATCTCTTGGACTCTTCTGTGAGTGATGAGGGAGGAAATTGGAGCTTGGGACAGCGCCAACTGTTTTGTCTTGGAAGAGTACTACTTAAGAGGAACAGAATTCTTGTTCTAGATGAAGCTACCGCATCCATTGACTCCGCCACAGATGCCATTCTACAACAAATAATTAGACAAGAATTTGTAGAATGCACGGTTATAACTGTGGCTCACAGGGTTCCAACTGTAATAGATAGTGACATGGTCATGGTCCTCTCCTATGGGAAATTGGTGGAATATGAGGAGCCTTCAAGACTAATGGAGACCAACTCCTCATTCTCGAAGCTGGTAGCTGAATATTGGTCCAGCTGCAGGAAGAATTCTTCCTCAAATCTTAGCAGACAGCAACATTGA 4398 0.4018 MAYFGNIIDDFSGICLKDFDFTSFCSQRTTIDAINLLFICVFYTSMIISLMRRNSQCGSPSKSRFFILVSICCAIISIVFYSIGLRNLIAKTDNSKQLNWLACIVRGFIWTSLAVSLLVQRLKWIKILNSVWWACSCVLASVLNIEILFKKQAIEIFDVIQWFLHFLLLFCAFQNLGYFVSQSVPQSLSEPLLDQEVDTKQTGLGRANFLSKLTFSWINSLLSLGYSKSLVLEDIPSLLSEDEANLGYQNFMHAWESLVRERSKTNTKNLVLWSVVRTHLKENILIAFWALLRTFAVSVSPLILYAFVNYSNSRDAKNTNLKEGLSIVGFLILSKVVESLSQRHWFFYSRRSGLRMRSALMVAVYRKQLKLSSSARRRHSAGEIVNYIAVDAYRMGEFPWWFHIAWTSTLQLVLSIGILFGVVGVGVLPGLVPLLICGLINFPFAKILQNCMAQFMISQDERLRSTSEILNSMKIIKLQSWEDKFKNLVENLRAKEFIWLSKAQIMKAYGSFLYWMSPTIVSAVVFLGCALFNSAPLNAGTIFTVLAMLRNLGEPVRMIPEALSIMIQVKVSFDRLNTILLDEELDGSDGNRRNINRSSINAVEIQAGNFVWDHESVSPTLRDLNLEIKWGQKVAVCGPVGAGKSSLLYAVLGEVPKISGTVNVCGTIAYVSQTSWIQSGTVQDNILFGKPMDKTRYENAIKVCALDKDIEDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMTALREKTVILVTHQVEFLSEVDTILVMEDGKVTQSGNYENLLTAGTAFEQLVRAHKEAITELDQNNEKGTHKEESQGYLTKNQSEGEISTEGKLGVQLTQEEEKQIGDVGWKTFWDYISFSRGSLMLCWIMLGQSAFIALQTASMFWLALAIEVPKITSAILIGVYALISFSSAGFVYVRSLFTAHLGLKASTAFFNSFTTAIFNAPMLFFDSTPVGRILTRASSDLSILDFDIPYSITFVASVGLEIMVTICIMALVTWPVLIVAIPAMVASKYVQGYYQASARELMRINGTTKAPVMNFAAETSLGVVTVRAFNMTEIFFRNYLKLVDTDAALFFHSNVAMEWLVLRIEALQNLTVITSALLLIIVPQGYVTSGLVGLSLSYAFSLTGSQIFWTRWYCNLLNYIISVERIKQFIHLPVEPPAILEDHRPPSSWPSKGRIDLQALEIRYRPNAPLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVDPAKGYILIDGINICSIGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWEALEKCQLKETISRLPNLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQQIIRQEFVECTVITVAHRVPTVIDSDMVMVLSYGKLVEYEEPSRLMETNSSFSKLVAEYWSSCRKNSSSNLSRQQH* 1466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1613 1465 ProSitePatterns ABC transporters family signature. 728 742 IPR017871 GO:0005524
Gso8g1613 1465 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 67 1457 - -
Gso8g1613 1465 CDD ABC_6TM_ABCC_D2 895 1188 IPR044726 GO:0140359
Gso8g1613 1465 Pfam ABC transporter 621 755 IPR003439 GO:0005524
Gso8g1613 1465 Pfam ABC transporter 1230 1378 IPR003439 GO:0005524
Gso8g1613 1465 Gene3D ABC transporter type 1, transmembrane domain 865 1193 IPR036640 GO:0005524|GO:0016021
Gso8g1613 1465 Gene3D ABC transporter type 1, transmembrane domain 271 577 IPR036640 GO:0005524|GO:0016021
Gso8g1613 1465 SUPERFAMILY ABC transporter transmembrane region 272 582 IPR036640 GO:0005524|GO:0016021
Gso8g1613 1465 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 602 825 IPR027417 -
Gso8g1613 1465 Gene3D - 578 852 IPR027417 -
Gso8g1613 1465 Gene3D - 1197 1447 IPR027417 -
Gso8g1613 1465 CDD ABCC_MRP_domain1 603 803 - -
Gso8g1613 1465 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1215 1447 IPR003439 GO:0005524
Gso8g1613 1465 SMART AAA_5 1239 1424 IPR003593 -
Gso8g1613 1465 SMART AAA_5 630 803 IPR003593 -
Gso8g1613 1465 CDD ABCC_MRP_domain2 1211 1431 - -
Gso8g1613 1465 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 901 1163 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso8g1613 1465 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 284 568 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso8g1613 1465 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 67 1457 - -
Gso8g1613 1465 Pfam ABC transporter transmembrane region 284 548 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso8g1613 1465 Pfam ABC transporter transmembrane region 930 1162 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso8g1613 1465 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 605 826 IPR003439 GO:0005524
Gso8g1613 1465 MobiDBLite consensus disorder prediction 836 856 - -
Gso8g1613 1465 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1203 1446 IPR027417 -
Gso8g1613 1465 SUPERFAMILY ABC transporter transmembrane region 886 1195 IPR036640 GO:0005524|GO:0016021
Gso8g1613 1465 CDD ABC_6TM_ABCC_D1 285 576 IPR044746 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1613 Gso-Chr8 15767878 15775612 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1613 603 858 Calmodulin-binding Proteins AT2G36910 25.899 5.74e-22 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1613 - - gmx:100784827 2813.1