Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1612 ATGGCTTGCTTGGGAGGCACAACAGAAACACCAGATGCCAGTTTATGTGAGCCTCTATTAGTTCATAAGGACATGCATAAACAAACAGAACTAGGTCATGCCTCTTTTTGCAGCCGATTCAGTTTCTCTTGGATGAATGCTTTACTCAGTTTGGGTTACTCAAAGCCACTAGCACTTGAAGACATCCCTTCTCTTGCTTCTGAAGATAAAGCTGATTTTGCCTATCAAAAGTTTGTACATGCATGGGATTCCCTTTTGAGGGAGAGGGGCAGGAACAATTCTAGAAACTTGGTTCTATGGTCCATAGCTCGAGTTTACTTGAACGAAAACATCTTCATAGCTATTTGTGCATTTCTCAGGACAATTTGTGCTGTTGTTTCTCCTTTACTTGTTTATGCTTTTGTAAACTATTCCAGTAGCATTGAGGAAGAGCTAAAACAAGGAATAGCCATAGTGGGGTGTCTTATATTTGCCAAGGTAGTTGAGTCTGTTTCTCAGAGGCATTGGTCTTTTAACTCAAGGAGGTTAGGAATGAAAATGAGATCAGCTTTAATGGCTGCAGTGTATCAAAAGCAATTAAAACTTTCAGCTTTGGGTAGGAGAAGGCATTCAACTGGTGAGATTGTGAATTACATTGCAGTTGATGCCTATCGAATGGGGGAGTTTCCATGGTGGTTTCATACTTTAATGTTTTCTGCATTGCAAGTTTTTCTGGCTCTTGGTGTCCTTTTTGGTGTTGTTGGTCTAGGTGCTCTTCCTGGTTTGGTGCCTCTTATCATTTGTGGATTTCTCAATGTACCATTTGCAAAGATCCTTCAAAAATGTAGGTCGGAATTTATGATTGCACAGGATGAGCGTCTGAGGTCAACTTCAGAGATTCTTAGTAGTATGAAAATCATAAAGCTACAATCCTGGGAGGATAACTTCAAGAAATTTGTTGAATCCCTTCGCGCTAAAGAGTTTAAATGTTTGGCTGAAGCACAGTTTATGAGAGCTTATGGAACATTTATATATTGGATGTCTCCTGCCATCATTTCCTCGGTTATTTTTGTGGGATGCGCGCTTTTCCAGAGTTCCCCGTTGAATGCTGCAACTATCTTCTCAGTTCTTGCAGCATTGAGAAGCATGGGAGAACCTGTCACATTGATTCCAGAAGCACTTTCTGTTCTGATCCAAGTTAAGGTCTCCTTTGATCGTATCAACACTTTTTTGCTTGATGATGAGATAAAAAGTGATGATATTAGAAGAACTTCAAAACAAGATTCTTGCAGCAAGAGTGTTGAAATTCTAGCAGGCAACTTCAGTTGGGATCAGCAGCAATCAGTGCCTCCAACTTTGAGGAAAGTGAATTTTGAGATCAAGTGGGGGCAGACAGTAGCAGTTTGTGGCCCAGTTGGAGCTGGAAAAACATCTCTCCTGTATGCAATACTTGGAGAGATACCCAAAATTTCAGGAATTGTTAGTGTATGTGGAACACTTGCCTACGTTTCCCAAACTCCTTGGATCCAAAGTGGTACAATTCGTGATAATATTCTCTATGGAAAACCAATGGATGAAACCAGGTATGGATATACCATTAAGGTCTGTGCCTTGGATAAGGATATTGATGGATTTAGACATGGTGATCTTACGGAAATAGGTCAGAGAGGGATCAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTCGTGCAGTCTATAATGATGCTGATATCTATCTCCTAGATGACCCTTTTAGTGCTGTAGATGCTCATACTGCTTCTATTCTGTTTAATGATTGTGTCAGGGTTGCTTTAAGAAGGAAAACAGTTATTCTTGTGACTCATCAAGTTGAATTTCTCTCAAAAGTTGATAAAATCTTGGTAATGGAAAGAGGAAAAATTACTCAATTGGGTAATTATGAAGATCTGTTGACTGCTGGAACAGCATTTGAACAACTTTTGAGTGCTCATAGAGAGGCAATTACAGGGATAGAAAAAAGTAGTGCATACAAAAGAGAAGTTGAAAATTTGGTTGCAGTTCAGCTTGAGGACTCTCATGTTTGTAATCTCACTAAAGGTGGAAGTGATGGGGACATTTCTACCAAGATTCAACTTACACAAGAAGAAGAAAAGGAGAGTGGTGATGTTGGGTGGAAGCCATTCTGTGACTATATTTTCTTCCCCAAGGGATCTTTGCTTCTATGTTTGAGCATATTAGCACAATTTGCTTTTGTAGGTTTTCAGGCTGCATCAACTTATTGGCTTGCTCTAGCCATTGAAATGCAAAAAGTAACTAGCAGCATCTTAATTGGAGTTTATAGTGTGATTTCTTTTTTAAGCATTGTCTTTGTATATCTGAGGTCTTATTTTGCTGCACATCTTGGTTTAAAAGCTTCTAAAGCTTTTTTCTCTGCCTTCACTGATGCTATCTTTAATGCTCCTATGTTGTTCTTTGATTCAACCCCTATAGGAAGGATTTTGACCCGAGCTTCATCAGATTTGAGTATTTTAGATTTTGATATCCCTTTTACCACCATCTTTGTAACATCTGAAATAGCTGAACTTCTGACAATGATTGGGATAATGGTTTCGGTCACATGGCAAGTGCTCATTGTTGCAGTTCTTGCCATGGTGGCCTCAAAATATGTTCAGGGCTATTATCAAGCTTCTGCTAGAGAAATTATACGGATCAATGGAACTACTAAAGCTCCTCTTATGAATTTTACAGCTGAGACATCACTTGGTGCAGTTACTATCAGAGCTTTCAACATGACTGACAGATTTTTCAAAAACTACCTTAATCTTGTTGACACAGATGCCACAATGTTCTTTCATTCCAATGCTGCTATCGAATGGTTAATTCTGAGGATTGAATTACTTCAAAATTTGACACTCTTCACTGCAGCTTTGCTGCTTGTTCTACTTCCAAAGGGATATGTGGCCCCTGGCCTTGTTGGACTTTCTCTGTCTTATGCTTTTTCATTGACAGCAACCGTAGTTTATCTGACTCGAATGTTTTGTAACTTATCAAACTATGTAATCTCTGTTGAAAGAATCAAGCAATTCATTCACATACCGGCAGAGCCTAGTGCAATTGTAGAGGATAATAGACCACCACCTTCTTGGCCTTCCAAGGGTAGAATAGATCTCCAATCTCTAGAGATTAGATATCGGCCAAATGCTCCATTAGTTCTTAAGGGCATCTCTTGTAGGTTTGAAGAAGGGAGTAGAGTGGGAGTTGTGGGAAGGACTGGAAGTGGAAAAACTACACTTATAAGTGCTTTGTTTCGCTTAGTTGAGCCTACCAGAGGTGACATTCTTATTGATGGTATTAATATCTGCTCAATAGGGCTAAAAGATTTGAGAACAAAGCTAAGCATCATTCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTCGAAAGAACTTGGACCCTCTATGCCTGTACTCTGATGATGAAATATGGAAGGCTTTAGAGAAATGTCAGCTTAAGGCAACAATTAGTAGTCTTCCAAATCTCTTGGACACTTCTGTGAGTGATGAAGGTGAAAACTGGAGTGTGGGACAGCGTCAACTCATATGTCTCGGAAGAGTGCTTCTTAAGAGGAACAGAATTCTTGTTCTGGATGAAGCTACTGCTTCCATTGATTCTGCCACAGATGTTATTCTTCAACAAGTCATCAGACAAGAATTTTCAGAATGCACAGTTATAACGGTGGCTCACAGAGTTCCAACTGTAATAGACAGTGACATGGTCATGGTCCTATCCTATGGGAAAGTGGTGGAGTATGACAAGCCTTCAAAGCTCATGGGTACGAACTCTTCATTCTCCATGCTGGTAGCTGAATATTGGTCCAACTGCAATAGGAATTCGCTCCCAAAAGATTAG 3873 0.3984 MACLGGTTETPDASLCEPLLVHKDMHKQTELGHASFCSRFSFSWMNALLSLGYSKPLALEDIPSLASEDKADFAYQKFVHAWDSLLRERGRNNSRNLVLWSIARVYLNENIFIAICAFLRTICAVVSPLLVYAFVNYSSSIEEELKQGIAIVGCLIFAKVVESVSQRHWSFNSRRLGMKMRSALMAAVYQKQLKLSALGRRRHSTGEIVNYIAVDAYRMGEFPWWFHTLMFSALQVFLALGVLFGVVGLGALPGLVPLIICGFLNVPFAKILQKCRSEFMIAQDERLRSTSEILSSMKIIKLQSWEDNFKKFVESLRAKEFKCLAEAQFMRAYGTFIYWMSPAIISSVIFVGCALFQSSPLNAATIFSVLAALRSMGEPVTLIPEALSVLIQVKVSFDRINTFLLDDEIKSDDIRRTSKQDSCSKSVEILAGNFSWDQQQSVPPTLRKVNFEIKWGQTVAVCGPVGAGKTSLLYAILGEIPKISGIVSVCGTLAYVSQTPWIQSGTIRDNILYGKPMDETRYGYTIKVCALDKDIDGFRHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTASILFNDCVRVALRRKTVILVTHQVEFLSKVDKILVMERGKITQLGNYEDLLTAGTAFEQLLSAHREAITGIEKSSAYKREVENLVAVQLEDSHVCNLTKGGSDGDISTKIQLTQEEEKESGDVGWKPFCDYIFFPKGSLLLCLSILAQFAFVGFQAASTYWLALAIEMQKVTSSILIGVYSVISFLSIVFVYLRSYFAAHLGLKASKAFFSAFTDAIFNAPMLFFDSTPIGRILTRASSDLSILDFDIPFTTIFVTSEIAELLTMIGIMVSVTWQVLIVAVLAMVASKYVQGYYQASAREIIRINGTTKAPLMNFTAETSLGAVTIRAFNMTDRFFKNYLNLVDTDATMFFHSNAAIEWLILRIELLQNLTLFTAALLLVLLPKGYVAPGLVGLSLSYAFSLTATVVYLTRMFCNLSNYVISVERIKQFIHIPAEPSAIVEDNRPPPSWPSKGRIDLQSLEIRYRPNAPLVLKGISCRFEEGSRVGVVGRTGSGKTTLISALFRLVEPTRGDILIDGINICSIGLKDLRTKLSIIPQEPTLFKGSIRKNLDPLCLYSDDEIWKALEKCQLKATISSLPNLLDTSVSDEGENWSVGQRQLICLGRVLLKRNRILVLDEATASIDSATDVILQQVIRQEFSECTVITVAHRVPTVIDSDMVMVLSYGKVVEYDKPSKLMGTNSSFSMLVAEYWSNCNRNSLPKD* 1291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1612 1290 Pfam ABC transporter 446 580 IPR003439 GO:0005524
Gso8g1612 1290 Pfam ABC transporter 1060 1208 IPR003439 GO:0005524
Gso8g1612 1290 Gene3D - 1026 1276 IPR027417 -
Gso8g1612 1290 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 731 1006 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso8g1612 1290 SMART AAA_5 455 628 IPR003593 -
Gso8g1612 1290 SMART AAA_5 1069 1262 IPR003593 -
Gso8g1612 1290 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1045 1277 IPR003439 GO:0005524
Gso8g1612 1290 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 427 650 IPR027417 -
Gso8g1612 1290 ProSitePatterns ABC transporters family signature. 553 567 IPR017871 GO:0005524
Gso8g1612 1290 CDD ABC_6TM_ABCC_D2 725 1018 IPR044726 GO:0140359
Gso8g1612 1290 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1032 1275 IPR027417 -
Gso8g1612 1290 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 409 651 IPR003439 GO:0005524
Gso8g1612 1290 SUPERFAMILY ABC transporter transmembrane region 727 1023 IPR036640 GO:0005524|GO:0016021
Gso8g1612 1290 CDD ABC_6TM_ABCC_D1 112 400 IPR044746 GO:0140359
Gso8g1612 1290 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 111 392 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso8g1612 1290 Pfam ABC transporter transmembrane region 728 987 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso8g1612 1290 Pfam ABC transporter transmembrane region 111 372 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso8g1612 1290 Gene3D ABC transporter type 1, transmembrane domain 694 1024 IPR036640 GO:0005524|GO:0016021
Gso8g1612 1290 Gene3D - 437 678 IPR027417 -
Gso8g1612 1290 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 22 1288 - -
Gso8g1612 1290 SUPERFAMILY ABC transporter transmembrane region 99 406 IPR036640 GO:0005524|GO:0016021
Gso8g1612 1290 CDD ABCC_MRP_domain1 427 628 - -
Gso8g1612 1290 Gene3D ABC transporter type 1, transmembrane domain 98 412 IPR036640 GO:0005524|GO:0016021
Gso8g1612 1290 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 22 1288 - -
Gso8g1612 1290 CDD ABCC_MRP_domain2 1041 1261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1612 Gso-Chr8 15767164 15787878 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1612 421 674 Calmodulin-binding Proteins AT2G36910 28.467 4.40e-24 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1612 - - gmx:100813711 2437.53