Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1591 ATGGAGATGAAGGGTTTTATGTTCCACCACCAACAGCAGCAACAAGTAGTAGTGGAGGAAAACATGTCAAATTTGACTTCTGCATCTGGTGAAGCTAGTGCTGCTTCCTCAGGTAACAGAACTGAAATTGGAACCAGTTACATGGCTCAACCACCATCTCAGACTCAACAGTCAAAGAAAAAGAGAAACCTCCCTGGCAACCCAGACCCTGATGCTGAGGTAATAGCCTTGTCCCCCAAGAGTCTTCTTGCCACAAACAGGTTCATTTGTGAGATCTGTAACAAAGGATTTCAAAGAGATCAGAACCTTCAGCTTCACAGAAGAGGGCACAATTTGCCATGGAAACTGAAGCAGAGAACAAGCAAAGAGGTGAGGAAGAAGGTGTATGTGTGTCCAGAGCCAAGTTGTGTACATCATGACCCATCAAGGGCCCTGGGGGACCTAACTGGGATCAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCCAAGAAGTATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAAACCTGTGGCACTAGGGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCTTTCTGTGATGCATTAGCAGAGGAGAGTGCAAGAGCCATCACAAACCCACTTCTTCCCCCACAACAACAACAACAACAACCTTCTTCTTCCTCTCACCACCAAATGAGTACTCTCCAAACCCAATTCAACCCTCAAAATAACCTCCATGCCTTCCCATTGAAAAAAGAGCAGCAAAGTTTCAATGTTAGGACAGAAATGCCCCCTTGGCTTGGCCCACCAGCTGCAACAGTAGTTGTTGATCATCACCATCATCATCTCTCCTCATCATCCTCATCCATAATGTTCTCTCCTCCTCACCAGGAAAACCCTAATCCTAACCCTAGCCTTGGTCCCACTCTTGCTGCCTACAAAACAGTCGCTAACCCCCCACACATGTCAGCCACAGCATTGCTGCAGAAAGCAGCTCAGATGGGTGCAACCATGAGCAGAAGTGGTTCCTCACCAGCCATGACTGGGCCCCACCATCATGCTCACGTGTCCTATTCTGCTGATTCTGCCAGTGCTCATTTTGGGTTGAACTTGTCCTCACGTGAAGACACCACCACCTCAACAACAACAACAACAACTACTAAAACTGCTACAGTGTTCAGCCATGGCTTATTATCATCACCATTGGGGAATAAAGCTGGTGCTGCTGTGTCTTCTTCTGCACCATCCCTTCTTCATGATGTTATCAACTCTTTCTCAGTTTCTCCTTCTGCCTTTGAGGGAACCCCTTTTGAGGATGCATTCATTCAGAGCTCAAAGAAACTCGATGATGATGATCATCATAACTTGTATTTGCATGACACATTCTCAAAAACAAGTAGTAGTACTGGTGCAGCTGGAAATATTAACGAAGGGTTGACTAGAGATTTCTTGGGTCTTAGGCCCCTCTCTCATACTGATATTCTCACCATTGCCGGCATTGGAAATTGCATCCATGATCACCAAAATCAGTCTCAAAAGCCATGGCAAGGTTAG 1593 0.462 MEMKGFMFHHQQQQQVVVEENMSNLTSASGEASAASSGNRTEIGTSYMAQPPSQTQQSKKKRNLPGNPDPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITNPLLPPQQQQQQPSSSSHHQMSTLQTQFNPQNNLHAFPLKKEQQSFNVRTEMPPWLGPPAATVVVDHHHHHLSSSSSSIMFSPPHQENPNPNPSLGPTLAAYKTVANPPHMSATALLQKAAQMGATMSRSGSSPAMTGPHHHAHVSYSADSASAHFGLNLSSREDTTTSTTTTTTTKTATVFSHGLLSSPLGNKAGAAVSSSAPSLLHDVINSFSVSPSAFEGTPFEDAFIQSSKKLDDDDHHNLYLHDTFSKTSSSTGAAGNINEGLTRDFLGLRPLSHTDILTIAGIGNCIHDHQNQSQKPWQG* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1591 530 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 110 IPR013087 -
Gso8g1591 530 MobiDBLite consensus disorder prediction 24 72 - -
Gso8g1591 530 Gene3D Classic Zinc Finger 142 221 - -
Gso8g1591 530 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Gso8g1591 530 Gene3D Classic Zinc Finger 69 135 - -
Gso8g1591 530 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 515 - -
Gso8g1591 530 SMART c2h2final6 129 159 IPR013087 -
Gso8g1591 530 SMART c2h2final6 164 184 IPR013087 -
Gso8g1591 530 SMART c2h2final6 88 110 IPR013087 -
Gso8g1591 530 MobiDBLite consensus disorder prediction 24 63 - -
Gso8g1591 530 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 24 515 - -
Gso8g1591 530 Pfam Zinc-finger double-stranded RNA-binding 88 110 IPR022755 -
Gso8g1591 530 SUPERFAMILY beta-beta-alpha zinc fingers 87 184 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1591 Gso-Chr8 15561207 15564814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1591 1 352 IDZ Gene Family AT1G55110 57.560 1.83e-127 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso8g1591 zf-C2H2_jaz 7.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1591 K25870 - gmx:100808344 985.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0078 7 681893 685319 Gso8g1591 8 15561207 15564814 GST
Gso15g0218 15 1986255 1989332 Gso8g1591 8 15561207 15564814 PCT
Gso11g3590 11 51603759 51606694 Gso8g1591 8 15561207 15564814 PCT
Gso8g1591 8 15561207 15564814 Gso15g0218 15 1986255 1989332 PCT
Gso8g1591 8 15561207 15564814 Gso11g3590 11 51603759 51606694 PCT