Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1580 ATGACGTACTTTGGGATTAACATAGCGGATTTCTCGTGGACTTGTCTGAGAGACTTTGATCTCACTTCTTTGTGCTCCCAAACGAGCATAATAGACATTTTAAAGCTACTTTTCATCGCTGTCTTCTACACGTCTTTGCTTGTTTCTTTAATCAGAAGACATTCCGAATGTGGTAGCAACAGAAAGAACTGGGTTTTCCTAGTTGTCTCAGTTTGTTGTGCTCTCATTAGCATTGCACATTTTTGCAATGGCTTGAAGTTGTGGAATCAGAAGAGCTGGTTAGCTTCTACTTTCAGAGCATTTGTGTGGCTTTCTCTAACAATTTCATTACATGTTCAGAGAAACAAATGGATCAAATCTCTAAACTCTATCTGGTGGGCATCTTCCTGTGTATTGGCTTCAGCTCTCAACATTGAAATTATGTTCAAAGAGCACACAGTTGAACTTTTCGAAATGGTACAATGGCTTGTACATTTCTCACTTCTCTTTTGCGCCTTCCAAAATCTCCCTTATTTTGCCACATCCGAAGGTATCCAAGATACTACTAGTTTATCTGAGCCTCTGATAGCTCCGAGAGTTGAAACTAAACAAACGCAACTAGGCCATGCTACCCTTCTCAGTAAGTTGACTTTCTCTTGGGTTAATTCTTTACTCAGACTGGGTTACTCAAAGCCACTAGCTCTTGAAGAAATCCCATTTCTTCTTCCTGAAGATGAAGCAAACTCTGCCTACCAAGACTTCGTGCATGCATGGGAATCCCTTCTAAGTGAGAACAACAATAACAACAACAACAACAAAAACTTGGTTCTTTGGTCTGTAGTAAGAACTTTCTCAAAGGAGAACATATTAATAGCACTTTACGCATTAATAAGAAGTATTTGCATGATAATTTCTCCTCTAATACTCTATGCTTTTGTAAACTACTCGAATAGCACTGAGGCAGATCTCAAAGAAGGTTTTTCCATACTGGGTTTTATGATTATCAGCAAAGTGGTTGAATCTCTGTGCCAGAGACATTTCGGTTTTGGCTCGAGGCGGTCAGGGATGAAAATTAGATCAGCTCTGATGGTGGCAGTGTATCAGAAACTGCTTAAGCTCTCCAGCTCAGCAAGGAGAAGGCACTCAACTGGAGAAGTTGTGAATTACATCGCAGTTGATGCATATCGATTGGGAGAATTTCCATGGTGGTTTCACATAACATGGACTTCTGCAGTGCAACTTGTTTTGTCCATTGTTCTCCTTTTTGGTGTTGTAGGTGCCGGTGCTCTTCCAGGTTTAGTCCCTCTTCTCATCTGTGGAGTTCTCAATGTACCATTTGCAAAGATGATACAAAATTCTCAGTCACAATTCATGATGGCGCAAGATGAGCGTCTCAGAGCAACTTCCGAAATTCTAAATAGTATGAAAATCATCAAGTTACAATCCTGGGAGGATAAATTCAAGAACTTAGTTTTGTCCCTACGTGCTAAAGAATTCATATGGCTGTCTAAGGCACAGATCATAAAAGCTTATGGGTCATTTCTGTATTGGATGACTCCTACCATCGTTCCTTCTGTTGTTTTCATGGGGTGTTCTCTTTTCGATAGTGCTCCATTGAATGCTGGAATCATTTTCACAGTTCTTACGACATTGAGGATAATGGGAGAACCTGTTCGGTTGATCCCCGAGGCTCTATCGATTATGATCCAAGTTAAGGTCTCCTTTGATCGTCTCAATACCTTTTTGCTCGATGAAGAGTTAGATAGTATTAATGGTTATGGAAGAAATATAAAGCAAAGTTCAGTTAATGCAGTAGAAATCCAAGCTGGCAATTTCATTTGGGATCATGAATCAGTGTCTCCAACTTTAAGAGATGTGAATTTAGAAATCAAATGGGGACAGAAAATTGCAGTTTGTGGACCAGTTGGAGCTGGAAAATCATCTCTTTTGTATGCAGTACTTGGAGAGATTCCCAAGATCTCAGGAACTGTGAATGTAGGTGGCACAATAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGACAGTTCGGGATAATATACTCTTCGGAAAGCCAATGGACAAAACCAGATATGAGAATGCTACTAAAGTTTGTGCCTTAGATATGGATATCAATGATTTTAGCCATGGTGATCTTACCGAAATAGGCCAGCGAGGGATTAACATGAGTGGAGGACAGAGGCAAAGGATTCAACTAGCTCGAGCAGTTTACAACGACGCTGACATCTATCTCCTTGATGATCCATTCAGTGCAGTTGATGCACACACTGCTGCTATTCTGTTCAATGACTGTGTCATGACTGCTCTAAGAGAGAAAACAGTCATTCTAGTGACTCATCAAGTGGAGTTTCTCACAGAAGTTGATACAATCCTGGTAATGGAGGGTGGAAAAGTTATTCAATCAGGTAGTTATGAAGATCTCCTAACGGCCAGAACTGCCTTTGAACAACTTGTGAGTGCCCATAAAGCTACATTAACAGGAGTGGATCAAAAAAATGAAAGTGAAATTGATTCTGATATTGAGGTTATGGTACATCCAGAAGAGTCTCAAAGTTTTAATCTCACTAAAAATCAAAGTGAGCGGGTGATTTCTACCAAGGGTCAACTTGGGGCACAGCTTACACAAGACGAAGAAAAAGAGATTGGTGATATTGGGTGGAAGCCATTCTGGGATTATATTTCATTTTCCAAGGGATCATTCTTGCTGTGTTTAACCATGTCAGCACAGTTTGCTTTTATTGCTTTGCAGACTGCATCAACCTATTGGCTTGCTCTAGCCATTGAAATTCCAAAAGTCACTAGTGGCATTTTGATTGGAGTTTTCTCATTATTTTCATTACTGAGTGCTGTATTTATATATATAAGGTCTGTCCTGGCGGCTAATCTTGGATTAAAAGCTTCTATAGCCTTCTTCTCAAGTTTCACTTCGGCTATCTTCAATGCTCCTATGTTTTTCTTTGACTCAACCCCTGTAGGAAGGATTTTAACCCGAGCTTCATCAGATTTGAGCATTTTGGACCTTGATATTCCTTATACTCTCACTTTAGTAGCATTTGTAGCTGCTGATGTTCTGGTGACAATATGTGTAATGGTTTCAGTCACATGGCAAGTTCTTATTGTTGCTATTCCTGCTACCGTGGCATCAATATATATTCAGGGATATTATCAAGCCTCGGCGAGGGAATTGATAAGGATCAATGGAACCACAAAAGCTCCAGTCATGAATTTTGCTGCTGAGACATCACTTGGGGTGGTTACTGTAAGAGCATTCAACACGGTGAACAGATTTTTCAACAACTACCTAAAGCTTGTGGACATGGATGCAACATTGTTCTTTCATTCTATCGTGACCATGGAATGGTCAATTTTAAGGATTGAAGTACTTCAAAATTTGACAGTCTTCACTGCAGCTTTATTACTTATTCTACTTCCTAAGGGATATGTACCTTCAGGTCTTGTGGGATTGTCTCTGGCTTATGCGTTGACACTGAAAGAAGCCCAAGTATTTTGGAGTCGAATGTTTAGCATGTCATCAAACCATATCATCTCTGTTGAAAGAATAATGCAATTCATTGAAATACCAGCAGAGCCTCCAGCCATTGTGGAGGATAACAGACCTCCATCTTCATGGCCTTCCAAGGGTAGGATTGATCTTCGAGCCCTAGAGATTAGATATCATCCAAATGCTCCATTAGTCCTTAAGGGTATAAATTGTACGTTTAAAGAAGGGAATAGAGTTGGAGTTGTAGGAAGGACCGGAAGTGGAAAAACTACACTTATAAGTGCTTTGTTTCGCATAGTTGAACCTTCAAGTGGTGATATTTTAATAGATGGGATTAACATATGCTCAATAGGGTTAAAGGATTTGAGAATGAAACTTAGCATCATCCCTCAAGAACCTACTCTTTTCAAGGGCAGCATTAGGACCAACCTGGACCCTCTAGGCCTCTATGACGATGATGAAATATGGAAGGCTTTAGAGAAATGTCAGCTAAAGGAAACAATCAGAAAGCTACCACGTCTCTTGGATTCTTCTGTGAGTGATGAAGGTGGAAATTGGAGCTTGGGACAACAGCAACTGTTTTGTCTTGGAAGAGTACTACTTAAGAGGAACAGAATACTTGTTCTAGACGAAGCTACTGCATCGATTGACTCTGCAACAGATGCCATTCTACAACAAGTGATTAGACGAGAATTTGCAGAATGCACGGTTGTAACCGTGGCTCACAGAGTTCCAACTGTAATAGATAGCGACATGGTCATGGTCCTGTCCTATGGGAAACTAGTGGAATATGATGACCCTTCAAAACTTATGGAGACCAACTCTTGGTTCTCTAGATTGGTCGCTGAATATTGGTCGAGCTGCAGGAAGAACTCCTCCCCAAATATTAACAGGCAGCAACATTGA 4410 0.4036 MTYFGINIADFSWTCLRDFDLTSLCSQTSIIDILKLLFIAVFYTSLLVSLIRRHSECGSNRKNWVFLVVSVCCALISIAHFCNGLKLWNQKSWLASTFRAFVWLSLTISLHVQRNKWIKSLNSIWWASSCVLASALNIEIMFKEHTVELFEMVQWLVHFSLLFCAFQNLPYFATSEGIQDTTSLSEPLIAPRVETKQTQLGHATLLSKLTFSWVNSLLRLGYSKPLALEEIPFLLPEDEANSAYQDFVHAWESLLSENNNNNNNNKNLVLWSVVRTFSKENILIALYALIRSICMIISPLILYAFVNYSNSTEADLKEGFSILGFMIISKVVESLCQRHFGFGSRRSGMKIRSALMVAVYQKLLKLSSSARRRHSTGEVVNYIAVDAYRLGEFPWWFHITWTSAVQLVLSIVLLFGVVGAGALPGLVPLLICGVLNVPFAKMIQNSQSQFMMAQDERLRATSEILNSMKIIKLQSWEDKFKNLVLSLRAKEFIWLSKAQIIKAYGSFLYWMTPTIVPSVVFMGCSLFDSAPLNAGIIFTVLTTLRIMGEPVRLIPEALSIMIQVKVSFDRLNTFLLDEELDSINGYGRNIKQSSVNAVEIQAGNFIWDHESVSPTLRDVNLEIKWGQKIAVCGPVGAGKSSLLYAVLGEIPKISGTVNVGGTIAYVSQTSWIQSGTVRDNILFGKPMDKTRYENATKVCALDMDINDFSHGDLTEIGQRGINMSGGQRQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMTALREKTVILVTHQVEFLTEVDTILVMEGGKVIQSGSYEDLLTARTAFEQLVSAHKATLTGVDQKNESEIDSDIEVMVHPEESQSFNLTKNQSERVISTKGQLGAQLTQDEEKEIGDIGWKPFWDYISFSKGSFLLCLTMSAQFAFIALQTASTYWLALAIEIPKVTSGILIGVFSLFSLLSAVFIYIRSVLAANLGLKASIAFFSSFTSAIFNAPMFFFDSTPVGRILTRASSDLSILDLDIPYTLTLVAFVAADVLVTICVMVSVTWQVLIVAIPATVASIYIQGYYQASARELIRINGTTKAPVMNFAAETSLGVVTVRAFNTVNRFFNNYLKLVDMDATLFFHSIVTMEWSILRIEVLQNLTVFTAALLLILLPKGYVPSGLVGLSLAYALTLKEAQVFWSRMFSMSSNHIISVERIMQFIEIPAEPPAIVEDNRPPSSWPSKGRIDLRALEIRYHPNAPLVLKGINCTFKEGNRVGVVGRTGSGKTTLISALFRIVEPSSGDILIDGINICSIGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYDDDEIWKALEKCQLKETIRKLPRLLDSSVSDEGGNWSLGQQQLFCLGRVLLKRNRILVLDEATASIDSATDAILQQVIRREFAECTVVTVAHRVPTVIDSDMVMVLSYGKLVEYDDPSKLMETNSWFSRLVAEYWSSCRKNSSPNINRQQH* 1470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1580 1469 Pfam ABC transporter transmembrane region 283 547 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso8g1580 1469 Pfam ABC transporter transmembrane region 934 1144 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso8g1580 1469 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1219 1451 IPR003439 GO:0005524
Gso8g1580 1469 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 92 1462 - -
Gso8g1580 1469 SMART AAA_5 1243 1436 IPR003593 -
Gso8g1580 1469 SMART AAA_5 625 798 IPR003593 -
Gso8g1580 1469 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 282 563 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso8g1580 1469 CDD ABCC_MRP_domain1 598 798 - -
Gso8g1580 1469 CDD ABC_6TM_ABCC_D1 283 571 IPR044746 GO:0140359
Gso8g1580 1469 CDD ABC_6TM_ABCC_D2 899 1192 IPR044726 GO:0140359
Gso8g1580 1469 ProSitePatterns ABC transporters family signature. 723 737 IPR017871 GO:0005524
Gso8g1580 1469 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 905 1164 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso8g1580 1469 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 600 821 IPR003439 GO:0005524
Gso8g1580 1469 SUPERFAMILY ABC transporter transmembrane region 270 571 IPR036640 GO:0005524|GO:0016021
Gso8g1580 1469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 597 820 IPR027417 -
Gso8g1580 1469 Gene3D - 574 845 IPR027417 -
Gso8g1580 1469 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 92 1462 - -
Gso8g1580 1469 SUPERFAMILY ABC transporter transmembrane region 888 1199 IPR036640 GO:0005524|GO:0016021
Gso8g1580 1469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1207 1450 IPR027417 -
Gso8g1580 1469 CDD ABCC_MRP_domain2 1215 1435 - -
Gso8g1580 1469 Gene3D - 1200 1451 IPR027417 -
Gso8g1580 1469 Gene3D ABC transporter type 1, transmembrane domain 867 1198 IPR036640 GO:0005524|GO:0016021
Gso8g1580 1469 Gene3D ABC transporter type 1, transmembrane domain 259 573 IPR036640 GO:0005524|GO:0016021
Gso8g1580 1469 Pfam ABC transporter 1234 1382 IPR003439 GO:0005524
Gso8g1580 1469 Pfam ABC transporter 616 750 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1580 Gso-Chr8 15427853 15436409 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1580 579 1449 Calmodulin-binding Proteins AT2G36910 22.317 4.36e-50 193