Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1573 ATGGGGAATCAGAAGCAGAAGTGGACGCAGGACGAAGAAGATGCTCTCATCGCCGGCGTTGAAAAGCACGGCCCCGGAAAGTGGAAGAACATTCTCAAGGATCCCCAATTCGCCCCTTTCCTCACTTCCCGTTCCAACATCGACCTCAAGGATAAATGGCGCAATTTGAGCGTCAGCAACGGTGCTCAGGGCTCCAAAGAAAAATCTAGGGTTCCCAAGCTTAAAGCCCTCCCTGCTCCTCCTGCTCCTACCGCCACTCCTCAGAACGCCGCTCCTGCTCTGCAAAACGCAGCATCTGATGTCACTCCCCCAGATGCTTCTCAGAATGACCAAGATGCCAAAAACCCTCCAAGGTATAATGCAATGATTTTTGAAGCTCTATCAGCGCTGAAAGATAGTAATGGATCTGACATGAATGCCATCATTAAATTCATGGAGCAAAAAAATCTTCAGGTAAACCAAAATTTTAGAAGGGCATTAAGTACAAAGTTGAGGAGGCTTGTTAGTCAAGGGAAACTTGAAAAGGTACAAAATGGTTACAAGGTGAAAAAGGAAGCCTCCTCGGGGACAAAATCACCTTCACCAAAACCAAAGGATGTCCGGCCACCACAACCACAACAGCAATCCCCAGCTTCTGTCTTAATGACTAATGACACAATAAAGGAAGCTGCGGATACTGCAGCCTACAGAGTTGCTGATGCTGAAAGTAAATCATATCTGGCTGCAGAAGCAGTAAAGGAGGCTGAAAAAATATCATTGCTGGTTGAACATAGTGATTCAATGTTACAGCTAGCAAAAGATATATATGAACAATGTTCCCGTGGTGAAATTATCCTCTTGGCTTAA 846 0.4551 MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGAQGSKEKSRVPKLKALPAPPAPTATPQNAAPALQNAASDVTPPDASQNDQDAKNPPRYNAMIFEALSALKDSNGSDMNAIIKFMEQKNLQVNQNFRRALSTKLRRLVSQGKLEKVQNGYKVKKEASSGTKSPSPKPKDVRPPQPQQQSPASVLMTNDTIKEAADTAAYRVADAESKSYLAAEAVKEAEKISLLVEHSDSMLQLAKDIYEQCSRGEIILLA* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1573 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 62 IPR017930 -
Gso8g1573 281 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Gso8g1573 281 SUPERFAMILY "Winged helix" DNA-binding domain 114 196 IPR036390 -
Gso8g1573 281 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Gso8g1573 281 MobiDBLite consensus disorder prediction 53 117 - -
Gso8g1573 281 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 115 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso8g1573 281 MobiDBLite consensus disorder prediction 175 213 - -
Gso8g1573 281 Gene3D - 2 58 - -
Gso8g1573 281 CDD H15 117 196 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso8g1573 281 Pfam linker histone H1 and H5 family 117 179 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso8g1573 281 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Gso8g1573 281 PANTHER SINGLE MYB HISTONE 4 1 280 IPR044597 GO:0003691
Gso8g1573 281 SMART sant 4 59 IPR001005 -
Gso8g1573 281 Gene3D - 111 203 IPR036388 -
Gso8g1573 281 MobiDBLite consensus disorder prediction 88 115 - -
Gso8g1573 281 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 280 - -
Gso8g1573 281 SMART h15plus2 113 179 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso8g1573 281 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1573 Gso-Chr8 15351248 15356734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1573 1 281 Single Myb Histone (SMH) Gene Family AT1G72740 48.070 2.83e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso8g1573 Linker_histone 7.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1573 K09422 - gmx:778177 502.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0058 7 537413 541641 Gso8g1573 8 15351248 15356734 GST