Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1567 ATGTCTGATATCAACCCCAACCAGCCACTACCAATGGATGAAGTGGTGACCTATAAGGAGTGTTGGCACAACCATGCTGCAGCACGTGGTCGTGTCATCTATGATGGTTGTCTTGAGTATCTTGTTGATCAGGACAATCTCATATGTGCTTGTTGTGGTTGCCACCGCAACTTTCATCGGAAGCACACCATTTTCAACGGCATACCTGAAACTCAAACACTAGATCGAGTGCAGGGGATGAGGCCTAAGAGAAAGAAGAGGACTACTTTCTCGTCAGAGCAAAGAAACAAGCTGATCTGTTTTGCTGAGAGTGTGGGGTGGAAACCTCGAAAGGATAAGAAGAACGAAATCCAAAGCTTTTGCTCCAAGATGGGAATGACCCGTAGGATGTTCCTTATTTGGCTTAGCAACAATCGTCACCGGGCAATCAAGAAAGCTTAG 441 0.4603 MSDINPNQPLPMDEVVTYKECWHNHAAARGRVIYDGCLEYLVDQDNLICACCGCHRNFHRKHTIFNGIPETQTLDRVQGMRPKRKKRTTFSSEQRNKLICFAESVGWKPRKDKKNEIQSFCSKMGMTRRMFLIWLSNNRHRAIKKA* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1567 146 PANTHER MINI ZINC FINGER PROTEIN 1 15 141 - -
Gso8g1567 146 ProSiteProfiles 'Homeobox' domain profile. 81 145 IPR001356 GO:0003677
Gso8g1567 146 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 18 62 IPR006456 -
Gso8g1567 146 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 17 62 IPR006456 -
Gso8g1567 146 Pfam ZF-HD protein dimerisation region 16 63 IPR006456 -
Gso8g1567 146 SUPERFAMILY Homeodomain-like 75 142 IPR009057 -
Gso8g1567 146 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 83 139 IPR006455 -
Gso8g1567 146 Gene3D - 70 144 - -
Gso8g1567 146 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 15 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1567 Gso-Chr8 15248140 15248826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1567 18 145 ZF-HD Transcription Factor Family AT2G18350 29.050 1.80e-23 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso8g1567 ZF-HD_dimer 1.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1567 - - gmx:102668663 314.694