Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1566 ATGGCTGTACATACAAAATTCCATCTTATTACTTACTCACAAGAGATTGTAGATGGACAGCCTATTTTTGTCTCTTCAAACTGTCTTCCTATCAAGGCTTTGAAATTTGAACCTGCAGGTCATTCTTTCCATTCTGCTGCACTTAAACTTCTTGGTGTTCAGGAAGATAACAAAGATGCTGATGATAAAAAAGTGGTTGATGATAAGGAACAAACATATCTCCCATCTGATTCTTATAGCAGCAAGAGCAAAAAGAAAACTGGCACTGGAGACATGCAGCAAGATCACTATGCATTATTGGGTCTGGGTCATCTAAGGTATCTTGCTACGGAGGATCAAATTCGTAAAAGCTATCGTGAAACTGCCTTGAGGTTTCATCCTGACAAACAGGCTGCTCTTCTTCTTGCTGAGGAAACTGAAGCTGCAAAACAAGCAAAAAAGGATGAAATAGAAAGTCACTTTAAGGCAATCCAAGAAGCATATGAAGTGTTGATTGATCCATTGAAGAGAAGAATTTATGATTCCACCGATGAGTTTGATGATGAGATTCCCACTGATTGTGCTCCACAAGACTTCTTCAAGGTGTTTGGTCCTGCTTTTATGAGGAATGGGCGGTGGTCAGTTAATCAATCAATTCCATCACTAGGTGATGATAATACTCCGATAAAAGAAGTTGATAATTTCTACAATTTTTGGTACTCCTTTAAAAGTTGGAGGGAGTTTCCTCATGCTGATGAGTTTGATCTTGAGCAAGCTGAATCACGAGACCACAAGAGATGGATGGAAAGGCAGAATGCGAAATTGACAGAAAAAGCTAGGAAGGAAGACTATGCACGGATACGCACTCTTGTTGATAATGCTTATAAGAGAGACCCCAGAATTTTGAGAAGAAAGGAAGAAGAAAAAGCTGAGAAACAAAGGAAAAAGGAGGCTAAGTTCCTAGCAAAGAAGTTGCAGGAAGAAGAGGCAGCCAGAATCGCAGAAGAGGAGAGGCAGCGAAAAGAGGAGGAAGAGAGACAAGCCACAGAAGCTGCTTTACAACAGAAGAAGGTGAAAGAGAAAGAGAAAAAGCTCTTGCGGAAGGAGCGAGCACGACTTCGGACTCTTTCAGGACCTATTTTATCGCACCATTTACTTGATATTTCTGATGATGATGTAGAAAGGCTTTGCATGTCACTAGATATACAGCAGCTAAGGAGTCTCTGTGAGAACATGGGAGGCAGACAGATGTTATTAGAGCAAGCAAAAGTTTTGAGAGATGCACTGAGTTCTAAGAAAGAAGAGGCGGTTGATGAGAAAACTAATCAACAAAATGCCAATGGTTCCATCAAGGCTAATGGCAGTCCTTCACTAAGCAACATTGAGAAGAAGGAGAAACCCTGGAGTAAAGAAGAGATTGATCTATTGAGGAAAGGAATGCAGAAATATCCCAAAGGAACCTCACGGAGATGGGAGGTTATTTCAGAATACATTGGTACTGGAAGATCTGTTGAAGAAATTATGAAGGCTACTAAAACTGTACTCCTTCAGAAACCTGATTCGTCAAAAGCTTTTGACACATTTCTTGAGAAAAGGAAACCTGGTGCACAATCAATTGAGTCTCCATTGACAACCAGAGAAGAATTAGGAGTGCCAGCTCCTGCCTCCTCTACAAATAATGCAGAAGTCTCTCAGAACAAAGGTACTGATGATCAGAACTCCCCTGCTAATGGAGTTTCTTCCAGTTCAGAACAGGATGTGTGGTCTGCGGTGCAGGAACGAGCACTAGTTCAAGCTTTAAAAGCCTTTCCAAAGGAAACAAGCCAGAGATGGGAGCGTGTTGCAACAGCTGTACCTGGGAAGACTGTGAATCAGTGTAAGAAAAAATTTGCATTGATGAAGGAGAGTTTCAGGAACAAGAAAACTGCAGTCTAA 1914 0.4117 MAVHTKFHLITYSQEIVDGQPIFVSSNCLPIKALKFEPAGHSFHSAALKLLGVQEDNKDADDKKVVDDKEQTYLPSDSYSSKSKKKTGTGDMQQDHYALLGLGHLRYLATEDQIRKSYRETALRFHPDKQAALLLAEETEAAKQAKKDEIESHFKAIQEAYEVLIDPLKRRIYDSTDEFDDEIPTDCAPQDFFKVFGPAFMRNGRWSVNQSIPSLGDDNTPIKEVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLTEKARKEDYARIRTLVDNAYKRDPRILRRKEEEKAEKQRKKEAKFLAKKLQEEEAARIAEEERQRKEEEERQATEAALQQKKVKEKEKKLLRKERARLRTLSGPILSHHLLDISDDDVERLCMSLDIQQLRSLCENMGGRQMLLEQAKVLRDALSSKKEEAVDEKTNQQNANGSIKANGSPSLSNIEKKEKPWSKEEIDLLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEIMKATKTVLLQKPDSSKAFDTFLEKRKPGAQSIESPLTTREELGVPAPASSTNNAEVSQNKGTDDQNSPANGVSSSSEQDVWSAVQERALVQALKAFPKETSQRWERVATAVPGKTVNQCKKKFALMKESFRNKKTAV* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1566 637 MobiDBLite consensus disorder prediction 329 350 - -
Gso8g1566 637 ProSiteProfiles dnaJ domain profile. 95 177 IPR001623 -
Gso8g1566 637 PANTHER DNAJ DOMAIN, MYB-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED 1 634 - -
Gso8g1566 637 Coils Coil 301 369 - -
Gso8g1566 637 SUPERFAMILY Homeodomain-like 579 633 IPR009057 -
Gso8g1566 637 ProSiteProfiles Myb-like domain profile. 573 623 IPR001005 -
Gso8g1566 637 MobiDBLite consensus disorder prediction 427 459 - -
Gso8g1566 637 CDD SANT 460 502 IPR001005 -
Gso8g1566 637 ProSiteProfiles SANT domain profile. 576 631 IPR017884 -
Gso8g1566 637 SMART dnaj_3 94 169 IPR001623 -
Gso8g1566 637 SUPERFAMILY Homeodomain-like 453 502 IPR009057 -
Gso8g1566 637 MobiDBLite consensus disorder prediction 544 578 - -
Gso8g1566 637 MobiDBLite consensus disorder prediction 434 455 - -
Gso8g1566 637 Gene3D DnaJ domain 78 187 IPR036869 -
Gso8g1566 637 SUPERFAMILY Chaperone J-domain 94 201 IPR036869 -
Gso8g1566 637 Gene3D - 453 511 - -
Gso8g1566 637 SMART sant 577 629 IPR001005 -
Gso8g1566 637 SMART sant 457 510 IPR001005 -
Gso8g1566 637 MobiDBLite consensus disorder prediction 73 87 - -
Gso8g1566 637 Coils Coil 408 439 - -
Gso8g1566 637 MobiDBLite consensus disorder prediction 59 90 - -
Gso8g1566 637 CDD SANT 581 627 IPR001005 -
Gso8g1566 637 ProSiteProfiles Myb-like domain profile. 453 508 IPR001005 -
Gso8g1566 637 MobiDBLite consensus disorder prediction 522 578 - -
Gso8g1566 637 PRINTS DnaJ domain signature 48 66 IPR001623 -
Gso8g1566 637 PRINTS DnaJ domain signature 118 133 IPR001623 -
Gso8g1566 637 PRINTS DnaJ domain signature 149 169 IPR001623 -
Gso8g1566 637 Pfam Myb-like DNA-binding domain 459 500 IPR001005 -
Gso8g1566 637 Pfam Myb-like DNA-binding domain 580 623 IPR001005 -
Gso8g1566 637 Pfam DnaJ domain 95 174 IPR001623 -
Gso8g1566 637 ProSitePatterns Nt-dnaJ domain signature. 154 173 IPR018253 -
Gso8g1566 637 CDD DnaJ 95 166 IPR001623 -
Gso8g1566 637 Gene3D - 571 637 - -
Gso8g1566 637 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 1 634 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1566 Gso-Chr8 15232561 15236760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1566 96 295 C2H2 Transcription Factor Family AT1G74250 28.870 3.86e-18 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso8g1566 DnaJ 1.3e-16 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1566 K09522 - gmx:100814414 1139.79