Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1559 ATGAGACAAGGTGAAGCCAATTCGACCCAGGGTCCCAAGCTCAATTTGTTGCAGCATGCCAATGCTCTTGAGAATTTCTCCTCCCAAGCCAAATTTTTGAGCTCCACTTTTCTGTTTTCTGTCCCACCTAAGAAGCCGCCACACCACGCAGAACCAAACCCTGGGACTGCCGGGTTTGTATTTCGACGAAGTGAAACTATTCAAGGTTCACACAGAGTACAAGTCGAGAAGGCTTTGACTGCTCATTCAAGTCTACAAAATTCTAGTAGGATCTATGTCCAACCAGGAAAAACACAGGTTACTCCTCAGCTTCATGAAGATAGGAGAACAACTTCCTTCCATGGACGCTATGAGAATGACAGCCGGATATGTCCTGATGTCACTGTAACTCCAATTGTTAACAATCATAGTTCTCGGGGTTTGGATGGTTTGGTGAACAATCATACTAATTACACAGGCCAAATCATCAAGTCTTCTAACTGCATGGCTGTAGATATTGACGATGATGATGATGCCATACTTGCGAACATTGATGTTGACCAAATTGTTGAGGAACACCAGTCAACTTGCACTCCCAAACCATCAATATCCAAGTTTCCTCCTATAACACCAACTGCAGATAAAGATAATTTTGCTAGACAGGGGGATAATGTTTTGCCACCAGAGTTGTGTTTAGATTGCATCCATGGTTACAAGTTAGGGTTTTGCCCTGAAGCAGCAAGTCATTTGCAGGAAATGAAGGATAATCTAATTGCAATCTCTAATGAGCTGCTTGACAATGGTGAAAACCTCAATTCTACACAGATAGCAAAGCTTCGCCATGATAGGTCACAGCTCAATAAGCAAATTCAGCAGCTTGAAAAATATATTCATTCTGGAAATCTTAATGAGGAAAGGCAAAAGTCACATTTTTCTGCATCCACGGCACCACCTACATCTTTTGTGTATGAAACACCTCAGCAAACTGTCCTCTGTAATGGATCTAAGAGATATGATACCCAGGCTTATATGGGTAATGAGACATATGGGTCATCGTTCCAGTCTCTTCCATCTTTTTCTGTAGATAATTGTAACATGCCATTAGGTTCGGTGGGGAGGGAAGCGTTCATCCCAAAGATTATTGAAGTTAATTACATTGAAGGTTCTGGAGACAAACGCTGGAGCAGCTACGATTTTCCTTGGACAAAAGAGTTAGAGGTTAATAATAAAAAAGTATTTGGAAATCACTCATTTCGCCCCAATCAAAGAGAGATCATTAATGCCTCAATGAGTGGATGTGATGTTTTTGTTCTGATGCCCACTGGTGGTGGAAAGAGTCTGACCTATCAGTTACCAGCTCTTATTCGTCCTGGTATAACATTAGTAATTTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCACCTATTGCAGGCAAATATACCAGCTGCTTACTTAAGTGCCAATATGGAATGGGCTGAACAGCAGGAGATCCTCCGAGAACTTAATTCTGATTATTGTAAATACAAGTTATTATATGTGACACCCGAAAAGGTTGCCAGAAGTGATAATCTTCTACGCCACTTGGACAATTTACATTTTCGTGAATTGCTTGCAAGGATAGTAATTGATGAGGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGACTTGGTATATTGAAGCAGAAATTCCCAAATACTCCTGTTTTAGCTTTAACAGCTACAGCAACAGCTAGTGTAAAAGAAGATGTAGTGCAAGCACTTGGTCTTGTTAACTGCATCATTTTTCGGCAAAGTTTTAATCGCCCAAACTTATGGTATTCTGTTGTCCCCAAGACTAAAAAGTGTTTGGAGGACATTGACAAATTCATTAGGGTGAATCATTTTGATGAATGTGGCATTATCTATTGTCTTTCACGTATGGACTGTGAAAAGGTTGCTGAAAAATTACAGGAATGTGGGCATAAATGTGCATTTTATCATGGTAGCATGGACCCTGCTCAACGTGCTTCTGTTCAAAAGCAGTGGAGCAAAGATGAGATCAATATAATTTGTGCTACTGTGGCATTTGGAATGGGTATTAACAAACCTGATGTCCGCTTTGTAATCCATCATTCCCTCCCAAAATCTATTGAAGGCTATCATCAGGAATGTGGACGAGCTGGTAGAGATGGTCAACGTTCATCCTGTATATTATACTATAACTATAGTGATTATATACGAGTTAAGCATATGTTAAGCCAAGGAGCAATAGAGCAAAGTTCCATGACATCTGGATACAACCGTTCAAATATGATAAATTCAGGAAGGATACTAGAAACAAACACTGAAAACCTTGTGCGAATGGTCAGTTATTGTGAAAATGATGTTGATTGTCGGCGCCTTCTGCAGCTTGCTCATTTTGGGGAGAAGTTCAATTCTTCAACTTGTCAGAAAACATGTGATAATTGCTTAAAGATCACAAGTTTCATTGAGAAGGATGTCACTGAGATTGCAAATCAATTGGTTGAACTTGTTAAGCTAACAGGACAGAGGTTCTCATCATCTCATATATTAGAAGTGTATCGTGGTTCCTTAAGCCAAATGGTCAAGAAACACCGGCATGAGATTGTGAGCCTTCATGGTGCTGGAAAGCATCTAGCTAAGGGTGAGGCTTCCCGCATATTGCATCATCTTGTTGTTGAGGATTTTCTTGGGGAGGAAGTAAAGAAAAGTGATTTTTATGGATCTGTATCATCAATATTGAAGGTAAATGAGCCCAAGGTCCGTAATCTGTTTGCAGGCCAGAGAATTATATTGAGATTCCCATCCTCTGTAAAGGCATCAAAACCAGGGAAATCTGATGCAACTCCAGCTAAGGGTTCTCTGACCTCTGAAAAGCTGAATGTTATGCAAATTGACCCTCCTTCACCTCAAACTGAAGTGGATCATATTCTTTCAGCTAAGTTATACAATGCCCTGCGGTTGTTGAGGAAAAGTCTTGTTACAGAAGCTGGAGAGGGTGTCATGCCTCACCACATATTTGGTAATGCTACATTGCTTCTGATAAGCAAGAGAGTGCCGAGAACAAAAGAAGAACTCCTTGATATCAATGGCATTGGCAAGGCTAAGGTAAGCAAGTATGGGGATCAGTTACTGGAAACCATTGAAAAAACCGTAAATGAACATTACAAGTTGGACAACATCGGTAGCGGTAGCAAAGGAAGTGCAGATTCTACCAAAAAGAGACGAGTGCCAAATGGAAATTCAGATACAAATGTTGAGGATGATGACGCCCCCACCAAAAGTACAGGTCGTTCAAAGAAAAGGACGGTAAAGAGACAAAATAGGAAAGGTGTGATATATGATTCTCCAGAGGAAGATTATTTTCAAGGATGCCCTGATGAAGACCTAGATTTTGACATCATAGAAATTGATGCATTAGATCAAGTGACTTGTAAAAATACTGCAGGAAGAGTACTACCTCAATGGACAGCATCTTGA 3483 0.4048 MRQGEANSTQGPKLNLLQHANALENFSSQAKFLSSTFLFSVPPKKPPHHAEPNPGTAGFVFRRSETIQGSHRVQVEKALTAHSSLQNSSRIYVQPGKTQVTPQLHEDRRTTSFHGRYENDSRICPDVTVTPIVNNHSSRGLDGLVNNHTNYTGQIIKSSNCMAVDIDDDDDAILANIDVDQIVEEHQSTCTPKPSISKFPPITPTADKDNFARQGDNVLPPELCLDCIHGYKLGFCPEAASHLQEMKDNLIAISNELLDNGENLNSTQIAKLRHDRSQLNKQIQQLEKYIHSGNLNEERQKSHFSASTAPPTSFVYETPQQTVLCNGSKRYDTQAYMGNETYGSSFQSLPSFSVDNCNMPLGSVGREAFIPKIIEVNYIEGSGDKRWSSYDFPWTKELEVNNKKVFGNHSFRPNQREIINASMSGCDVFVLMPTGGGKSLTYQLPALIRPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWAEQQEILRELNSDYCKYKLLYVTPEKVARSDNLLRHLDNLHFRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWYSVVPKTKKCLEDIDKFIRVNHFDECGIIYCLSRMDCEKVAEKLQECGHKCAFYHGSMDPAQRASVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCILYYNYSDYIRVKHMLSQGAIEQSSMTSGYNRSNMINSGRILETNTENLVRMVSYCENDVDCRRLLQLAHFGEKFNSSTCQKTCDNCLKITSFIEKDVTEIANQLVELVKLTGQRFSSSHILEVYRGSLSQMVKKHRHEIVSLHGAGKHLAKGEASRILHHLVVEDFLGEEVKKSDFYGSVSSILKVNEPKVRNLFAGQRIILRFPSSVKASKPGKSDATPAKGSLTSEKLNVMQIDPPSPQTEVDHILSAKLYNALRLLRKSLVTEAGEGVMPHHIFGNATLLLISKRVPRTKEELLDINGIGKAKVSKYGDQLLETIEKTVNEHYKLDNIGSGSKGSADSTKKRRVPNGNSDTNVEDDDAPTKSTGRSKKRTVKRQNRKGVIYDSPEEDYFQGCPDEDLDFDIIEIDALDQVTCKNTAGRVLPQWTAS* 1161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1559 1160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 386 743 IPR027417 -
Gso8g1559 1160 MobiDBLite consensus disorder prediction 1059 1113 - -
Gso8g1559 1160 Gene3D - 602 821 IPR027417 -
Gso8g1559 1160 PANTHER DNA HELICASE RECQ FAMILY MEMBER 104 1128 - -
Gso8g1559 1160 SUPERFAMILY HRDC-like 981 1054 IPR010997 GO:0000166|GO:0044237
Gso8g1559 1160 MobiDBLite consensus disorder prediction 1070 1098 - -
Gso8g1559 1160 Gene3D HRDC domain 974 1061 IPR044876 -
Gso8g1559 1160 CDD DEXHc_RecQ 402 601 - -
Gso8g1559 1160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 600 868 IPR027417 -
Gso8g1559 1160 SMART RQC_2 827 937 IPR018982 GO:0006260|GO:0006281|GO:0043138
Gso8g1559 1160 Pfam Helicase conserved C-terminal domain 620 724 IPR001650 -
Gso8g1559 1160 Pfam RQC domain 824 938 IPR018982 GO:0006260|GO:0006281|GO:0043138
Gso8g1559 1160 ProSiteProfiles HRDC domain profile. 977 1059 IPR002121 GO:0003676
Gso8g1559 1160 Pfam DEAD/DEAH box helicase 413 581 IPR011545 GO:0003676|GO:0005524
Gso8g1559 1160 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 419 594 IPR014001 -
Gso8g1559 1160 Pfam HRDC domain 981 1049 IPR002121 GO:0003676
Gso8g1559 1160 Gene3D - 375 601 IPR027417 -
Gso8g1559 1160 Pfam RecQ zinc-binding 736 818 IPR032284 -
Gso8g1559 1160 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 533 542 IPR002464 -
Gso8g1559 1160 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 4A 104 1128 - -
Gso8g1559 1160 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 619 766 IPR001650 -
Gso8g1559 1160 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 403 878 IPR004589 GO:0004386|GO:0006310
Gso8g1559 1160 CDD SF2_C_RecQ 602 734 - -
Gso8g1559 1160 Gene3D - 825 934 IPR036388 -
Gso8g1559 1160 SMART helicmild6 644 725 IPR001650 -
Gso8g1559 1160 Coils Coil 269 289 - -
Gso8g1559 1160 SMART ultradead3 407 610 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1559 Gso-Chr8 15180355 15188767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1559 633 748 Eukaryotic Initiation Factors Gene Family AT3G19760 24.138 2.26e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1559 K10901 - gmx:100800006 2306.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g1559 8 15180355 15188767 Gso8g1559 8 15180355 15188767 ECH