Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso8g1559 | ATGAGACAAGGTGAAGCCAATTCGACCCAGGGTCCCAAGCTCAATTTGTTGCAGCATGCCAATGCTCTTGAGAATTTCTCCTCCCAAGCCAAATTTTTGAGCTCCACTTTTCTGTTTTCTGTCCCACCTAAGAAGCCGCCACACCACGCAGAACCAAACCCTGGGACTGCCGGGTTTGTATTTCGACGAAGTGAAACTATTCAAGGTTCACACAGAGTACAAGTCGAGAAGGCTTTGACTGCTCATTCAAGTCTACAAAATTCTAGTAGGATCTATGTCCAACCAGGAAAAACACAGGTTACTCCTCAGCTTCATGAAGATAGGAGAACAACTTCCTTCCATGGACGCTATGAGAATGACAGCCGGATATGTCCTGATGTCACTGTAACTCCAATTGTTAACAATCATAGTTCTCGGGGTTTGGATGGTTTGGTGAACAATCATACTAATTACACAGGCCAAATCATCAAGTCTTCTAACTGCATGGCTGTAGATATTGACGATGATGATGATGCCATACTTGCGAACATTGATGTTGACCAAATTGTTGAGGAACACCAGTCAACTTGCACTCCCAAACCATCAATATCCAAGTTTCCTCCTATAACACCAACTGCAGATAAAGATAATTTTGCTAGACAGGGGGATAATGTTTTGCCACCAGAGTTGTGTTTAGATTGCATCCATGGTTACAAGTTAGGGTTTTGCCCTGAAGCAGCAAGTCATTTGCAGGAAATGAAGGATAATCTAATTGCAATCTCTAATGAGCTGCTTGACAATGGTGAAAACCTCAATTCTACACAGATAGCAAAGCTTCGCCATGATAGGTCACAGCTCAATAAGCAAATTCAGCAGCTTGAAAAATATATTCATTCTGGAAATCTTAATGAGGAAAGGCAAAAGTCACATTTTTCTGCATCCACGGCACCACCTACATCTTTTGTGTATGAAACACCTCAGCAAACTGTCCTCTGTAATGGATCTAAGAGATATGATACCCAGGCTTATATGGGTAATGAGACATATGGGTCATCGTTCCAGTCTCTTCCATCTTTTTCTGTAGATAATTGTAACATGCCATTAGGTTCGGTGGGGAGGGAAGCGTTCATCCCAAAGATTATTGAAGTTAATTACATTGAAGGTTCTGGAGACAAACGCTGGAGCAGCTACGATTTTCCTTGGACAAAAGAGTTAGAGGTTAATAATAAAAAAGTATTTGGAAATCACTCATTTCGCCCCAATCAAAGAGAGATCATTAATGCCTCAATGAGTGGATGTGATGTTTTTGTTCTGATGCCCACTGGTGGTGGAAAGAGTCTGACCTATCAGTTACCAGCTCTTATTCGTCCTGGTATAACATTAGTAATTTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCACCTATTGCAGGCAAATATACCAGCTGCTTACTTAAGTGCCAATATGGAATGGGCTGAACAGCAGGAGATCCTCCGAGAACTTAATTCTGATTATTGTAAATACAAGTTATTATATGTGACACCCGAAAAGGTTGCCAGAAGTGATAATCTTCTACGCCACTTGGACAATTTACATTTTCGTGAATTGCTTGCAAGGATAGTAATTGATGAGGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGACTTGGTATATTGAAGCAGAAATTCCCAAATACTCCTGTTTTAGCTTTAACAGCTACAGCAACAGCTAGTGTAAAAGAAGATGTAGTGCAAGCACTTGGTCTTGTTAACTGCATCATTTTTCGGCAAAGTTTTAATCGCCCAAACTTATGGTATTCTGTTGTCCCCAAGACTAAAAAGTGTTTGGAGGACATTGACAAATTCATTAGGGTGAATCATTTTGATGAATGTGGCATTATCTATTGTCTTTCACGTATGGACTGTGAAAAGGTTGCTGAAAAATTACAGGAATGTGGGCATAAATGTGCATTTTATCATGGTAGCATGGACCCTGCTCAACGTGCTTCTGTTCAAAAGCAGTGGAGCAAAGATGAGATCAATATAATTTGTGCTACTGTGGCATTTGGAATGGGTATTAACAAACCTGATGTCCGCTTTGTAATCCATCATTCCCTCCCAAAATCTATTGAAGGCTATCATCAGGAATGTGGACGAGCTGGTAGAGATGGTCAACGTTCATCCTGTATATTATACTATAACTATAGTGATTATATACGAGTTAAGCATATGTTAAGCCAAGGAGCAATAGAGCAAAGTTCCATGACATCTGGATACAACCGTTCAAATATGATAAATTCAGGAAGGATACTAGAAACAAACACTGAAAACCTTGTGCGAATGGTCAGTTATTGTGAAAATGATGTTGATTGTCGGCGCCTTCTGCAGCTTGCTCATTTTGGGGAGAAGTTCAATTCTTCAACTTGTCAGAAAACATGTGATAATTGCTTAAAGATCACAAGTTTCATTGAGAAGGATGTCACTGAGATTGCAAATCAATTGGTTGAACTTGTTAAGCTAACAGGACAGAGGTTCTCATCATCTCATATATTAGAAGTGTATCGTGGTTCCTTAAGCCAAATGGTCAAGAAACACCGGCATGAGATTGTGAGCCTTCATGGTGCTGGAAAGCATCTAGCTAAGGGTGAGGCTTCCCGCATATTGCATCATCTTGTTGTTGAGGATTTTCTTGGGGAGGAAGTAAAGAAAAGTGATTTTTATGGATCTGTATCATCAATATTGAAGGTAAATGAGCCCAAGGTCCGTAATCTGTTTGCAGGCCAGAGAATTATATTGAGATTCCCATCCTCTGTAAAGGCATCAAAACCAGGGAAATCTGATGCAACTCCAGCTAAGGGTTCTCTGACCTCTGAAAAGCTGAATGTTATGCAAATTGACCCTCCTTCACCTCAAACTGAAGTGGATCATATTCTTTCAGCTAAGTTATACAATGCCCTGCGGTTGTTGAGGAAAAGTCTTGTTACAGAAGCTGGAGAGGGTGTCATGCCTCACCACATATTTGGTAATGCTACATTGCTTCTGATAAGCAAGAGAGTGCCGAGAACAAAAGAAGAACTCCTTGATATCAATGGCATTGGCAAGGCTAAGGTAAGCAAGTATGGGGATCAGTTACTGGAAACCATTGAAAAAACCGTAAATGAACATTACAAGTTGGACAACATCGGTAGCGGTAGCAAAGGAAGTGCAGATTCTACCAAAAAGAGACGAGTGCCAAATGGAAATTCAGATACAAATGTTGAGGATGATGACGCCCCCACCAAAAGTACAGGTCGTTCAAAGAAAAGGACGGTAAAGAGACAAAATAGGAAAGGTGTGATATATGATTCTCCAGAGGAAGATTATTTTCAAGGATGCCCTGATGAAGACCTAGATTTTGACATCATAGAAATTGATGCATTAGATCAAGTGACTTGTAAAAATACTGCAGGAAGAGTACTACCTCAATGGACAGCATCTTGA | 3483 | 0.4048 | MRQGEANSTQGPKLNLLQHANALENFSSQAKFLSSTFLFSVPPKKPPHHAEPNPGTAGFVFRRSETIQGSHRVQVEKALTAHSSLQNSSRIYVQPGKTQVTPQLHEDRRTTSFHGRYENDSRICPDVTVTPIVNNHSSRGLDGLVNNHTNYTGQIIKSSNCMAVDIDDDDDAILANIDVDQIVEEHQSTCTPKPSISKFPPITPTADKDNFARQGDNVLPPELCLDCIHGYKLGFCPEAASHLQEMKDNLIAISNELLDNGENLNSTQIAKLRHDRSQLNKQIQQLEKYIHSGNLNEERQKSHFSASTAPPTSFVYETPQQTVLCNGSKRYDTQAYMGNETYGSSFQSLPSFSVDNCNMPLGSVGREAFIPKIIEVNYIEGSGDKRWSSYDFPWTKELEVNNKKVFGNHSFRPNQREIINASMSGCDVFVLMPTGGGKSLTYQLPALIRPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWAEQQEILRELNSDYCKYKLLYVTPEKVARSDNLLRHLDNLHFRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWYSVVPKTKKCLEDIDKFIRVNHFDECGIIYCLSRMDCEKVAEKLQECGHKCAFYHGSMDPAQRASVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCILYYNYSDYIRVKHMLSQGAIEQSSMTSGYNRSNMINSGRILETNTENLVRMVSYCENDVDCRRLLQLAHFGEKFNSSTCQKTCDNCLKITSFIEKDVTEIANQLVELVKLTGQRFSSSHILEVYRGSLSQMVKKHRHEIVSLHGAGKHLAKGEASRILHHLVVEDFLGEEVKKSDFYGSVSSILKVNEPKVRNLFAGQRIILRFPSSVKASKPGKSDATPAKGSLTSEKLNVMQIDPPSPQTEVDHILSAKLYNALRLLRKSLVTEAGEGVMPHHIFGNATLLLISKRVPRTKEELLDINGIGKAKVSKYGDQLLETIEKTVNEHYKLDNIGSGSKGSADSTKKRRVPNGNSDTNVEDDDAPTKSTGRSKKRTVKRQNRKGVIYDSPEEDYFQGCPDEDLDFDIIEIDALDQVTCKNTAGRVLPQWTAS* | 1161 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso8g1559 | 1160 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 386 | 743 | IPR027417 | - | |
Gso8g1559 | 1160 | MobiDBLite | consensus disorder prediction | 1059 | 1113 | - | - | |
Gso8g1559 | 1160 | Gene3D | - | 602 | 821 | IPR027417 | - | |
Gso8g1559 | 1160 | PANTHER | DNA HELICASE RECQ FAMILY MEMBER | 104 | 1128 | - | - | |
Gso8g1559 | 1160 | SUPERFAMILY | HRDC-like | 981 | 1054 | IPR010997 | GO:0000166|GO:0044237 | |
Gso8g1559 | 1160 | MobiDBLite | consensus disorder prediction | 1070 | 1098 | - | - | |
Gso8g1559 | 1160 | Gene3D | HRDC domain | 974 | 1061 | IPR044876 | - | |
Gso8g1559 | 1160 | CDD | DEXHc_RecQ | 402 | 601 | - | - | |
Gso8g1559 | 1160 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 600 | 868 | IPR027417 | - | |
Gso8g1559 | 1160 | SMART | RQC_2 | 827 | 937 | IPR018982 | GO:0006260|GO:0006281|GO:0043138 | |
Gso8g1559 | 1160 | Pfam | Helicase conserved C-terminal domain | 620 | 724 | IPR001650 | - | |
Gso8g1559 | 1160 | Pfam | RQC domain | 824 | 938 | IPR018982 | GO:0006260|GO:0006281|GO:0043138 | |
Gso8g1559 | 1160 | ProSiteProfiles | HRDC domain profile. | 977 | 1059 | IPR002121 | GO:0003676 | |
Gso8g1559 | 1160 | Pfam | DEAD/DEAH box helicase | 413 | 581 | IPR011545 | GO:0003676|GO:0005524 | |
Gso8g1559 | 1160 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 419 | 594 | IPR014001 | - | |
Gso8g1559 | 1160 | Pfam | HRDC domain | 981 | 1049 | IPR002121 | GO:0003676 | |
Gso8g1559 | 1160 | Gene3D | - | 375 | 601 | IPR027417 | - | |
Gso8g1559 | 1160 | Pfam | RecQ zinc-binding | 736 | 818 | IPR032284 | - | |
Gso8g1559 | 1160 | ProSitePatterns | DEAH-box subfamily ATP-dependent helicases signature. | 533 | 542 | IPR002464 | - | |
Gso8g1559 | 1160 | PANTHER | ATP-DEPENDENT DNA HELICASE Q-LIKE 4A | 104 | 1128 | - | - | |
Gso8g1559 | 1160 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 619 | 766 | IPR001650 | - | |
Gso8g1559 | 1160 | TIGRFAM | recQ_fam: ATP-dependent DNA helicase, RecQ family | 403 | 878 | IPR004589 | GO:0004386|GO:0006310 | |
Gso8g1559 | 1160 | CDD | SF2_C_RecQ | 602 | 734 | - | - | |
Gso8g1559 | 1160 | Gene3D | - | 825 | 934 | IPR036388 | - | |
Gso8g1559 | 1160 | SMART | helicmild6 | 644 | 725 | IPR001650 | - | |
Gso8g1559 | 1160 | Coils | Coil | 269 | 289 | - | - | |
Gso8g1559 | 1160 | SMART | ultradead3 | 407 | 610 | IPR014001 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso8g1559 | Gso-Chr8 | 15180355 | 15188767 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso8g1559 | 633 | 748 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 24.138 | 2.26e-07 | 52.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso8g1559 | K10901 | - | gmx:100800006 | 2306.18 |