Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1555 ATGGAGGGGATGAACTTCAGTTCATACAATCCTCAACTAGCCTCTAGCTTGAAGAAGAGTTACAGCAAGCAAGAGCATGATCATTCAGTAGAGCGTAATCATCTCAATGAAGAAGATCATATGTCTCCCTCTTTCAATCTGCGGAATATTTCAAAGCTCATTCTCCCCCCACTTGGTGTTTCAAGCCAGAATCCAGTTAACTCAAAAGGATGGATCATATCACCAATGGATTCCAGATACAGGTGTTGGGAGAGTTTTATGGTTCTTCTGGTAGCTTATTCTGCATGGGTGTATCCCTTTGAAGTTGCTTTCATGCACAAGTCTTCCAATAAGGAAATCTATATTGTGGACACTGTTGTTGATCTTTTCTTCGGTATTGATATTGTTTTGACATTCTTCGTGGCTTACATTGATCGAACCACTCATCTACTAGTTCGAGACAAGAAGAAGATTGTAGTAAGATACCTGTCTACATGGTTCGTGATGGATTTGGCATCAACTATACCATATGAGGCAATTGGATATTTGTTCACTGGCAGACAGAAAGTGGGCCTCCCATACTTCCTCTTGGGCCTGCTCAGATTTTGGAGAATCAGACGGGTCAAGCAATACTTCACAAGGCTTGAGAAAGACATCAGGTTCAGCTATTTCTGGGTCCGATGTGCTAGGCTTCTTTCTGTAACACTTTTTTCAGTTCATTGTGCTGGGTGTCTGTATTACATGCTAGCTGATCGTTACCCCCACCAAGGAAAGACATGGATTGGAGCTGTGAATCCAAACTTCCGAGAGACAAGCCTTCGGATCAGATACATTTCAGCCATGTACTGGTCCATCACTACCATGACCACTGTAGGTTATGGTGACCTCCACGCTGTCAACACCATAGAAATGATCTTCATTATTTTCTACATGCTCTTTAACCTTGGCCTAACTGCTTACTTGATTGGTAACATGACAAATCTTGTTGTTGAAGGAACTCGCCGTACCATGGAGTTTAGAAATAGCATTGAAGCAGCATCAAATTTTGTGTGCCGAAATCGGTTGCCTCCAAGGTTAAAAGAGCAGATCTTGGCTTACATGTGCTTAAGATTTAAGGCAGAGAGCTTGAACCAGCATCAGCTTATTGAACAGCTTCCGAAGTCGATTTGCAAAAGCATCTGCCAGCATTTGTTTTTTGCAACTGTAGAGAAAGTCTATCTTTTCAAAGGCGTCTCAAAAGAAATTATTTTGTCCCTGGTTGCAAAAATGAAGGCAGAATACATACCACCCAGAGAGGATGTTATCATGCAAAATGAAGCACCAGATGATGTTTACATAATAGTCTCTGGCGAAGTGGAGATCCTCGATACTGAAACGGAGAAAGAAAGAATTTTAGGGACTCTACATACTGGGGAAATGTTTGGAGAGTTTGGTGCACTTTGTTGTAGACCTCAGAGCCTTACCTACAGAACCAAGACTCTCACACAGCTCCTGAGACTCAAGACCAATACTCTTCTAGAAGCAATGCAGATTAAAAGAGAAGATAACATACAAATACTCAAAAATTTTCTTCAGCATTTCAAGCAGGTTAAGGATCTGAGTATCAAAGATTTGATGGTGGAGAACGTAGAAGAAGAGGACCCTAACATGGCTGTGAACTTGCTAACTGTGGCAAGCACTGGCAATGCTGCTTTTCTTGAGGAGCTTCTAAGAGCAGGTTTGGATCCTGACATTGGAGACTCCAAAGGGAAAACTCCATTGCACATAGCAGCATCAAATGGGCATGAAGGGTGTGTTAAAGTCTTACTCAAGCATGCATGCAACATGCATATAAAAGACATGAATGGTAACACTGCACTATGGGATGCTATAGCATCAAAACATTACTCAATATTCCGGATCCTCTTCCAGCTTTCTGCTCTCTCTGATCCAAACATAGCAGGCGATCTCATGTGTACAGCAGCAAAAAGAAATGAACTAACAGTGATGACCGATCTTCTAAGGCAAGGACTAAACGTTGACTCCAAAGATCACCGTGATACAACTGCAATCCAAATTGCCATGGCCGAAAATCATGTTGACATGGTTCAGTTGCTTGTCATGAATGGTGCTGATGTCTCTGATGTGCATAACCATGAATTTTGTTCATCCACCTTAAATGAAATGCTGCAGAAGCGTGAAATTGGGCATCTAATTAATGTAACTGAGGTCATGCTCAGTGAAGTTGTATTAAAAGGGAGACATCAAGAGCAGGAGCACAATGGAGGAAGATCTAATAGTGGACTAAAGTTTCCAAGGGTAAGCATATATAGAGGTCACCCTGTAGTTAGAAGAGAAAAATGTTCCATGGAAGCTGGGAAGCTAATAAGGTTGCCTGATTCAATAGAGGAACTAAAAACTATTGCAGGTGAAAAATTTGGGTTTGATGCAAAAGATGCAATGGTGACAAATGAAGAAGGAGCTGAAATAGACTCCGTTGATGTGATCAGAGATAATGACAAACTTTTTTTTTGTTGGATAAGCTGA 2505 0.4132 MEGMNFSSYNPQLASSLKKSYSKQEHDHSVERNHLNEEDHMSPSFNLRNISKLILPPLGVSSQNPVNSKGWIISPMDSRYRCWESFMVLLVAYSAWVYPFEVAFMHKSSNKEIYIVDTVVDLFFGIDIVLTFFVAYIDRTTHLLVRDKKKIVVRYLSTWFVMDLASTIPYEAIGYLFTGRQKVGLPYFLLGLLRFWRIRRVKQYFTRLEKDIRFSYFWVRCARLLSVTLFSVHCAGCLYYMLADRYPHQGKTWIGAVNPNFRETSLRIRYISAMYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVCRNRLPPRLKEQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFFATVEKVYLFKGVSKEIILSLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEILDTETEKERILGTLHTGEMFGEFGALCCRPQSLTYRTKTLTQLLRLKTNTLLEAMQIKREDNIQILKNFLQHFKQVKDLSIKDLMVENVEEEDPNMAVNLLTVASTGNAAFLEELLRAGLDPDIGDSKGKTPLHIAASNGHEGCVKVLLKHACNMHIKDMNGNTALWDAIASKHYSIFRILFQLSALSDPNIAGDLMCTAAKRNELTVMTDLLRQGLNVDSKDHRDTTAIQIAMAENHVDMVQLLVMNGADVSDVHNHEFCSSTLNEMLQKREIGHLINVTEVMLSEVVLKGRHQEQEHNGGRSNSGLKFPRVSIYRGHPVVRREKCSMEAGKLIRLPDSIEELKTIAGEKFGFDAKDAMVTNEEGAEIDSVDVIRDNDKLFFCWIS* 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1555 834 PANTHER POTASSIUM CHANNEL AKT2/3-LIKE 44 830 - -
Gso8g1555 834 SUPERFAMILY Voltage-gated potassium channels 75 323 - -
Gso8g1555 834 ProSiteProfiles Ankyrin repeat profile. 672 704 IPR002110 GO:0005515
Gso8g1555 834 SUPERFAMILY Ankyrin repeat 507 704 IPR036770 -
Gso8g1555 834 Gene3D - 544 723 IPR036770 -
Gso8g1555 834 SMART cnmp_10 400 517 IPR000595 -
Gso8g1555 834 Pfam Cyclic nucleotide-binding domain 420 503 IPR000595 -
Gso8g1555 834 Gene3D Jelly Rolls 367 542 IPR014710 -
Gso8g1555 834 Pfam KHA, dimerisation domain of potassium ion channel 758 830 IPR021789 -
Gso8g1555 834 ProSiteProfiles Ankyrin repeat region circular profile. 575 606 - -
Gso8g1555 834 PRINTS Ankyrin repeat signature 576 591 IPR002110 GO:0005515
Gso8g1555 834 PRINTS Ankyrin repeat signature 688 702 IPR002110 GO:0005515
Gso8g1555 834 ProSiteProfiles cAMP/cGMP binding motif profile. 400 519 IPR000595 -
Gso8g1555 834 PANTHER POTASSIUM CHANNEL AKT1 44 830 IPR045319 GO:0005249|GO:0006813
Gso8g1555 834 ProSiteProfiles Ankyrin repeat profile. 575 607 IPR002110 GO:0005515
Gso8g1555 834 ProSiteProfiles Ankyrin repeat region circular profile. 672 700 - -
Gso8g1555 834 SUPERFAMILY cAMP-binding domain-like 327 519 IPR018490 -
Gso8g1555 834 SMART ANK_2a 672 701 IPR002110 GO:0005515
Gso8g1555 834 SMART ANK_2a 608 639 IPR002110 GO:0005515
Gso8g1555 834 SMART ANK_2a 575 604 IPR002110 GO:0005515
Gso8g1555 834 SMART ANK_2a 542 571 IPR002110 GO:0005515
Gso8g1555 834 PRINTS EAG/ELK/ERG potassium channel family signature 117 127 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso8g1555 834 PRINTS EAG/ELK/ERG potassium channel family signature 128 137 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso8g1555 834 PRINTS EAG/ELK/ERG potassium channel family signature 270 287 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso8g1555 834 PRINTS EAG/ELK/ERG potassium channel family signature 296 307 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso8g1555 834 PRINTS EAG/ELK/ERG potassium channel family signature 314 323 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso8g1555 834 ProSiteProfiles KHA domain profile. 759 834 IPR021789 -
Gso8g1555 834 Pfam Ankyrin repeats (3 copies) 551 631 IPR002110 GO:0005515
Gso8g1555 834 Gene3D - 81 323 - -
Gso8g1555 834 CDD CAP_ED 400 513 IPR000595 -
Gso8g1555 834 Pfam Ion transport protein 81 329 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1555 Gso-Chr8 15135438 15142172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1555 4 580 Ion Channels AT4G22200 71.012 0.0 853
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1555 K21867 - gmx:100798422 1650.18