Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1553 ATGAAGATTGTTGTGATGCTATTGCTACCGCCCTTGATGTTTGCACTGTTTTTTTCATGCACGAGTTCATTGGCAGTATCCACAAACACAAGTACCACATGCCCCATGGACTTGAATTACGTTCTGAGAATCCCATGGAACACTTCTGCCTGCCATAACTTCCAACAAACTCTGGCGGCTAAAAACGGAACCGACGCAAACACATGTTGCATCTCTCTCTTGTCCCTCTTCGGAATAGGACTTGCAAATCATCTCAAGGAGACTTCTCAGTTCCAACTCCAAAACCTTGCCTCCTCACTTTCATGCATCAAAGACTTCCAATCAAAGCTCTCTTCCCTCTCTCTCCCCAACAACCTCGTTGACACATGCTTCGACCCTCTTCAGTTTGTGATCTCCCCAAACATCTGTGCTGGAATTCAAACCATCCCTGATTGGACAAAAAAAGTTGGTCAGTCCACACCACTCAACACTGCTTGCAGATCAGATCTCACTGACATCTCTCTCTGTGATGTGTGTTTACAAGCTGGATTGCAGGTCAAGCAGAAGCTTATTTCCATTGATGGTAATGCCTCACATTCCATTGATTGTTTTTACTTTGCCATTCTCTATGCTGCTGGGATTGTCAATGAGTTTGGACCTGAAAGCAATGGTGCTGTAAGTTGCATTTTTAGCATATCAGTTTACTCACAAGGGGGCTCTGGGGGAAAGCGTCACCAGGCTCTTGTGTTTGGTTTGACAGGTGCCGGGGTTGCTTTGTTGGTCATGTCTTCTTTTTTGGGGATGTATTCGTGGTATGACAGGAAGCATAGGAGGAAAAAGCTTGAGACTTTTAATCAGTTTGATTTTGACCCTGAGGAACAAGGTGGCTCTAGGCCTAGATTGAGACCCAATACAGGGTCCATTTGGTTCAAAATTGAGGAACTTGAGAAGGCTACCGATAATTTTTCATCCAAGAACTTCATTGGCCGAGGTGGGTTTGGGATGGTGTTCAAGGGAACCCTGTCTGATGGAACCGTGGTGGCGGTTAAAAGGATCTTGGAATCTGATTTTCAAGGGAATGCTGAGTTTTGTAATGAGGTGGAGATCATTAGCAACCTCAAGCACCGGAATCTGGTGCCCCTTAGGGGGTGTTGTGTGGCTGAGGAGGATGAGAATTGTGATGAAAGGGGAAGCAGCCAAAGGTATCTTGTGTATGATTACATGCCAAATGGGAACCTGGAAGACCATATCTTTTTATCATCAACGGAGGACTCTCAGAAATCAAAAGGGTTGTCATTGACTTGGCCTCAGAGGAAAAGCATAATCTTGGATGTGGCAAAGGGGTTGGCCTATTTGCACTATGGAGTTAAACCAGCAATTTTCCACAGGGATATCAAGGCCACCAATATACTACTTGATTCAGATATGAGGGCAAGAGTTGCTGACTTTGGACTTGCAAAACAAAGCAGGGAGGGTCAGTCTCATCTCACTACTAGAGTTGCTGGAACTCATGGATATCTGGCACCAGAATATGCACTCTATGGTCAACTCACTGAGAAGAGTGATGTGTATAGCTTTGGTGTGGTTGTTTTGGAGATAATGTGTGGGAGGAAGGCTCTTGACTTGTCTTCATCAGGGTCACCAAGGGCATTCTTGATCACAGATTGGGCTTGGTCATTGGTGAAGGCTGGGAAGATAGAAGAAGCTCTTGATGGTTCCTTGGTGAAGGATAAGGATGAGAGCTTTCCTAGTTCAAATCCAAAGAGCATAATGGAGAGGTTTCTTCTGGTGGGAATTCTGTGCTCTCATGTCATGGTTGCTTTGAGGCCAACAATTGCTGATGCTTTGAAGATGTTGGAAGGTGACATTGAGGTTCCACAAATCCCTGATCGCCCCATGCCACTTGGCCATCCTTCTTCCTTTTACAATAATGATCATGGCAGTACTTTTAGCATATCTCCTGCATTAAGCGGCCCCAAATTGCAAACTGGAGACATGCTCAGGTCTATTATTGAGAACTAA 2001 0.4498 MKIVVMLLLPPLMFALFFSCTSSLAVSTNTSTTCPMDLNYVLRIPWNTSACHNFQQTLAAKNGTDANTCCISLLSLFGIGLANHLKETSQFQLQNLASSLSCIKDFQSKLSSLSLPNNLVDTCFDPLQFVISPNICAGIQTIPDWTKKVGQSTPLNTACRSDLTDISLCDVCLQAGLQVKQKLISIDGNASHSIDCFYFAILYAAGIVNEFGPESNGAVSCIFSISVYSQGGSGGKRHQALVFGLTGAGVALLVMSSFLGMYSWYDRKHRRKKLETFNQFDFDPEEQGGSRPRLRPNTGSIWFKIEELEKATDNFSSKNFIGRGGFGMVFKGTLSDGTVVAVKRILESDFQGNAEFCNEVEIISNLKHRNLVPLRGCCVAEEDENCDERGSSQRYLVYDYMPNGNLEDHIFLSSTEDSQKSKGLSLTWPQRKSIILDVAKGLAYLHYGVKPAIFHRDIKATNILLDSDMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDLSSSGSPRAFLITDWAWSLVKAGKIEEALDGSLVKDKDESFPSSNPKSIMERFLLVGILCSHVMVALRPTIADALKMLEGDIEVPQIPDRPMPLGHPSSFYNNDHGSTFSISPALSGPKLQTGDMLRSIIEN* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1553 666 CDD STKc_IRAK 321 614 - -
Gso8g1553 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Gso8g1553 666 Pfam SPARK 29 197 IPR043891 -
Gso8g1553 666 ProSitePatterns Protein kinases ATP-binding region signature. 321 343 IPR017441 GO:0005524
Gso8g1553 666 SUPERFAMILY Protein kinase-like (PK-like) 294 613 IPR011009 -
Gso8g1553 666 Gene3D Transferase(Phosphotransferase) domain 1 401 620 - -
Gso8g1553 666 SMART serkin_6 315 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1553 666 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 26 660 - -
Gso8g1553 666 Pfam Protein kinase domain 317 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1553 666 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 26 660 - -
Gso8g1553 666 Gene3D Phosphorylase Kinase; domain 1 290 400 - -
Gso8g1553 666 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Gso8g1553 666 ProSiteProfiles Protein kinase domain profile. 315 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1553 Gso-Chr8 15105573 15108897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1553 26 661 Receptor kinase-like Gene Family AT1G11050 63.579 0.0 798
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Gso8g1553 Pkinase 2.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1553 - - gmx:100797353 1310.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g1553 8 15105573 15108897 Gso8g1553 8 15105573 15108897 ECH
Gso15g0393 15 3631328 3634063 Gso8g1553 8 15105573 15108897 GST
Gso8g1553 8 15105573 15108897 Gso8g1062 8 9830175 9834226 PCT