Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1552 ATGGATTCTGGAAAGACTAATGAAGCACCCAATGCAAAGCTGGTTCGTGACTTTGACTTGAACATTTCATATGTGGAGGAGTTTGATGTGAATGCTGAAGACAAACTTTCATCGCCCATTCTCATGAATACTCAGCCGGCTTCTCAAAATTGCATTGAAAACATGAACATTCAGGATGAAATTGCAAATAACGGGGACACAACTATTCAAGCAAATTCTGCTGCTAAGGGAGTTACCTCTGTCTCCTTTGCACCAGGAAGAATCTCACAATACCGTCGTCGTCGCCGCCGTCGCAGTGTAGAATGTAAGCCGAGTACTGATCCAGATAGACTCTGCACAAATACTTATTGTAAAACAAGAAGAACTCCCTTGTGGCGCAAGGGACCTCTGGGACCAAAGACTTTGTGCAATGCTTGTGGCATTCAATATCTTAAGATAGTGAAGGGTACAGGCAGTGGCCTCCCTGCTGCAGTTGCAGATGATGAAGGTGATGCTTCTCCTGGTCCTGTCCCAGCTGCTGAAATCGTGGAAGAAGGGGATTCAAATCTCTAA 552 0.4511 MDSGKTNEAPNAKLVRDFDLNISYVEEFDVNAEDKLSSPILMNTQPASQNCIENMNIQDEIANNGDTTIQANSAAKGVTSVSFAPGRISQYRRRRRRRSVECKPSTDPDRLCTNTYCKTRRTPLWRKGPLGPKTLCNACGIQYLKIVKGTGSGLPAAVADDEGDASPGPVPAAEIVEEGDSNL* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1552 183 ProSiteProfiles GATA-type zinc finger domain profile. 117 143 IPR000679 GO:0006355|GO:0043565
Gso8g1552 183 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 104 148 - -
Gso8g1552 183 SMART GATA_3 106 159 IPR000679 GO:0006355|GO:0043565
Gso8g1552 183 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 40 144 - -
Gso8g1552 183 Pfam GATA zinc finger 116 143 IPR000679 GO:0006355|GO:0043565
Gso8g1552 183 Gene3D - 108 163 IPR013088 GO:0006355|GO:0008270
Gso8g1552 183 PANTHER GATA TRANSCRIPTION FACTOR 40 144 - -
Gso8g1552 183 MobiDBLite consensus disorder prediction 157 183 - -
Gso8g1552 183 CDD ZnF_GATA 112 157 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1552 Gso-Chr8 15089898 15091843 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1552 112 145 C2C2-Gata Transcription Factor Family AT3G20750 64.706 1.55e-11 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso8g1552 GATA 4.8e-12 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1552 - - gmx:102663335 247.669