Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1547 ATGGGAAGAAGAAACGGTGGTAGGTCCCTTCAAGAAACCCTCCGTCGCCGACTTGAGTCATGCAAATCCAAATACTCCACCGCCGAAGAATTCGCCAACCATCTCCGTTCAACTTATCCCGATTACCACCGAACCAAGCACCAAACCCTAATTCGATTTGTTCAGGAAGCTCTTCATTCCACCGCCAAGCTTAATCACACTCCCACACCCAAGCACTGCGACGGCGACGACGATGACGACGAAGAAGGAGAGGCTCAAAGCGCGTCTCGAAAGCGGCGGAAGAAAATCGATGGGAGTGAAGAGAGATTGCAGAGGATGGAAGCGTTACACGTCCGAAGCAAGGTGCAGAGATCTTCCTCATCGTCCTCTGCTTCGGAGAGCGACGATGAAGATGAAGAAGAAACCGTGTCGACTTCGGAGGACGCAATTTACGGGGAGAAGGTGGAGCCTGAGTTTGATTTGATGAAGACAATGCTGCGAAAGTCGTATACGCCGAAGAAGGTTGCCGCGGAGGAAAAAAACGTTGAATTGGAGGTGGGGAATAGCAGTAAGGACACTCTTGTGAACGAGGAAAGGAAGGAAGTGAAGGGCTCAAGTTCGGGTTCGGTTTCGAACAGGAAGGACGGACCGAGGTTTAAGGATTTGGGTGGGATGAAGGAGGTTTTGGAGGAACTGAAGATGGAAGTGATCGTGCCTTTGTTCCACCCCCAATTGCCAAGACAGTTGGGAGTGAGACCAATGGCTGGCATTTTGTTGCATGGACCACCTGGCTGTGGGAAGACTAAACTTGCTCATGCCATAGCTCATGAGACTGGTCTTCCTTTCTATCAGATTTCAGCTACTGAGGTGGTTTCTGGAGTTTCAGGTGCATCTGAAGAAAATATTAGAGAGCTTTTTGCTAAAGCGTACAGGTCTGCGCCTGCTATTGTCTTTATTGACGAGATTGATGCAATTGCATCTAAAAGAGAGAATTTGCAGCGTGAGATGGAGAAACGTATTGTGACGCAATTAATGACTTGCATGGATCAATCAAATAGGCTTCTTCAACCAGCGGATGATGTGGAGAGTTCTGGTGATGATCATCATCCTGGCTATGTTCTTGTAATTGGAGCTACTAATAGGCCTGATGCTGTTGACCCTGCCCTAAGAAGGCCCGGCCGGTTTGATCGTGAGATTATCATTGGCAATCCCGATGAATCTGCCAGGGAGGAGATCCTTTCTGTGCTCACTTGCGATCTTAGACTTGAGGGTTTATTTGATCTACGGAAAATAGCCAGGGCTACATCAGGATTCGTTGGTGCTGATTTGGCGGCTCTGGTTGACAAGGCTGGTAATCTTGCTATGAAGAGAATAATTGATGAAAGGAAACGTGAATTATCTCAAGATCTCACGAGTGAGCATGCTGAAGACTGGTGGAGGGAACCTTGGTCGGTTGAAGAAATAAACAAGCTTGCCATCAAAATGTCCGATTTCGAGGAAGCAGCTAATAAGGTGCAACCTTCATTAAGAAGAGAAGGGTTCTCTTCCATTCCTAATGTAAAATGGGACGACGTTGGAGGGCTTGATCTTTTAAGAAAGGAGTTTGAACGTTACATTGTAAGACGTATAAAATATCCTGAAGATTATGAGGAGCTTGGGGTGGATCTCGAGACGGGATTTTTGCTTTATGGACCTCCTGGGTGTGGTAAAACACTGATTGCCAAAGCTGTTGCCAATGAGGCAGGGGCTACTTTTATTCATATTAAGGGACCTGAACTTTTAAATAAATATGTTGGAGAAAGTGAGCTTGCAGTTCGTACAATGTTTAGCCGTGCAAGGACATGTGCGCCTTGCATACTTTTTTTTGATGAGATTGATGCTTTGACAACCAAACGTGGTAAAGAAGGTGGTTGGGTTGTTGAACGACTATTGAACCAGTTGCTTGTTGAGTTAGATGGCGCTGAACAACGAAAAGGTGTTTTTGTGATTGGTGCTACAAATAGGCCTGAGGTGATGGATCGTGCTGTCCTACGGCCCGGAAGGTTTGGTAAACTTCTTTATGTTCCACTTCCAAGCCCAGATGAACGAGTTTTGATATTGAAAGCTCTTGCAAGGAAGAAGGCTGTTGATGCCTCTGTGGATTTGAGTGCCATAGCAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTGATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAGACAACTTGTGATACATTGACCATCAAGAGGACCATCAAGAGGCACCATTTTGAGGTAGCACTGAGTAAAGTGTCTCCGTCTGTGTCAGACAGGCAAAAGCAGTATTATCAGCATTTGTCAGAGGGCTTTAAAGCAGCATGA 2376 0.4617 MGRRNGGRSLQETLRRRLESCKSKYSTAEEFANHLRSTYPDYHRTKHQTLIRFVQEALHSTAKLNHTPTPKHCDGDDDDDEEGEAQSASRKRRKKIDGSEERLQRMEALHVRSKVQRSSSSSSASESDDEDEEETVSTSEDAIYGEKVEPEFDLMKTMLRKSYTPKKVAAEEKNVELEVGNSSKDTLVNEERKEVKGSSSGSVSNRKDGPRFKDLGGMKEVLEELKMEVIVPLFHPQLPRQLGVRPMAGILLHGPPGCGKTKLAHAIAHETGLPFYQISATEVVSGVSGASEENIRELFAKAYRSAPAIVFIDEIDAIASKRENLQREMEKRIVTQLMTCMDQSNRLLQPADDVESSGDDHHPGYVLVIGATNRPDAVDPALRRPGRFDREIIIGNPDESAREEILSVLTCDLRLEGLFDLRKIARATSGFVGADLAALVDKAGNLAMKRIIDERKRELSQDLTSEHAEDWWREPWSVEEINKLAIKMSDFEEAANKVQPSLRREGFSSIPNVKWDDVGGLDLLRKEFERYIVRRIKYPEDYEELGVDLETGFLLYGPPGCGKTLIAKAVANEAGATFIHIKGPELLNKYVGESELAVRTMFSRARTCAPCILFFDEIDALTTKRGKEGGWVVERLLNQLLVELDGAEQRKGVFVIGATNRPEVMDRAVLRPGRFGKLLYVPLPSPDERVLILKALARKKAVDASVDLSAIAKMEACENLSGADLAALMNEAAMAALEERLTSIETTCDTLTIKRTIKRHHFEVALSKVSPSVSDRQKQYYQHLSEGFKAA* 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1547 791 MobiDBLite consensus disorder prediction 125 139 - -
Gso8g1547 791 CDD AAA 245 395 - -
Gso8g1547 791 Pfam AAA+ lid domain 705 746 IPR041569 -
Gso8g1547 791 Pfam AAA+ lid domain 419 454 IPR041569 -
Gso8g1547 791 MobiDBLite consensus disorder prediction 61 149 - -
Gso8g1547 791 CDD AAA 552 683 - -
Gso8g1547 791 MobiDBLite consensus disorder prediction 84 112 - -
Gso8g1547 791 ProSitePatterns AAA-protein family signature. 653 671 IPR003960 GO:0005524|GO:0016887
Gso8g1547 791 Gene3D - 684 767 - -
Gso8g1547 791 ProSitePatterns AAA-protein family signature. 366 384 IPR003960 GO:0005524|GO:0016887
Gso8g1547 791 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 511 786 IPR027417 -
Gso8g1547 791 Gene3D - 189 394 IPR027417 -
Gso8g1547 791 Gene3D - 511 781 IPR027417 -
Gso8g1547 791 PANTHER AAA-FAMILY ATPASE 86 786 - -
Gso8g1547 791 SMART AAA_5 246 398 IPR003593 -
Gso8g1547 791 SMART AAA_5 549 685 IPR003593 -
Gso8g1547 791 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 86 786 - -
Gso8g1547 791 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 505 IPR027417 -
Gso8g1547 791 MobiDBLite consensus disorder prediction 178 197 - -
Gso8g1547 791 Gene3D - 397 505 - -
Gso8g1547 791 Coils Coil 734 754 - -
Gso8g1547 791 Pfam ATPase family associated with various cellular activities (AAA) 250 395 IPR003959 GO:0005524|GO:0016887
Gso8g1547 791 Pfam ATPase family associated with various cellular activities (AAA) 554 682 IPR003959 GO:0005524|GO:0016887
Gso8g1547 791 MobiDBLite consensus disorder prediction 178 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1547 Gso-Chr8 15054728 15062481 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1547 242 789 Calmodulin-binding Proteins AT3G56690 36.738 2.64e-111 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1547 K14571 - gmx:100809594 1491.48