Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1536 ATGTCTCTGACAGGCCGTCCTCGTGTTGTTGCTAACGGGGTTCGAAGAACGAGAACTTTCCACTATTTATGGTGCATATATTGCCAGAGAACCGTCAGAATACCCTTTACAAACAATGATGATGGTTTTACTTCTACGTGCCCCTATTGCTTCCACCAACTGCGTTATGAGCTTGATATCTCAAGGCCAAGGCTTCTCATGAACGTGCCGAATAACTTAGAGCCTTCACCTGCTACTCAACTATTGCATAACTTGGCTCTCATTCTTGATCCACCTCTTAGGAGGCAAAACAACCATTTGATCAACACAATCCCACATTGGGAAACAGAAAATTATGAAGATGGTTCAAATTCATCAAATCCTCATCAGGCTTGGATTACACTCCGATTTCCAAGGCCAACTCGTGTACCTAGGCCTATTTCCAATGACACTGATGATCATGATGACACCCTTTTTGAGAACAATGCACTATTAGATGACTTCATTGATGGGGTGATTCAGAACAATAATAATAGACCAGGGCCACCTCCAGCAGCATCTTCAGCCATTGCAGCATTGCCAATGGTCAAGCTGACACAAACACATTTGGCAAGTGACCCCAATTGCCCAATTTGCAAAGATGAATTTTTGCTTGACATGGAAGCTAGAGAGTTGCCATGCAAGCATTTCTACCATTCTGACTGCATCATCCCTTGGCTGCGCATGCACAACACTTGCCCTGTGTGTCGCTATGAGCTACAAGGTGTTACTAGTGCTAATAATGCTAATTACTACCGTTTACAAAATGATGATGAAAATGCTGCAAGCAGCTTGGTCTGGATTTGGAACCAACTGGCTTCGTTCTGGCCTATCCGTTCTGTTCTAGATTGGGCACTGTCCTACTTTAATTTCCAAGAAAATCATGTTCGTGGTCGTAGAGGTAGCTCTTGGTGGCGAGCATTGTTAGTTATATAG 954 0.4361 MSLTGRPRVVANGVRRTRTFHYLWCIYCQRTVRIPFTNNDDGFTSTCPYCFHQLRYELDISRPRLLMNVPNNLEPSPATQLLHNLALILDPPLRRQNNHLINTIPHWETENYEDGSNSSNPHQAWITLRFPRPTRVPRPISNDTDDHDDTLFENNALLDDFIDGVIQNNNNRPGPPPAASSAIAALPMVKLTQTHLASDPNCPICKDEFLLDMEARELPCKHFYHSDCIIPWLRMHNTCPVCRYELQGVTSANNANYYRLQNDDENAASSLVWIWNQLASFWPIRSVLDWALSYFNFQENHVRGRRGSSWWRALLVI* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1536 317 SMART ring_2 202 242 IPR001841 -
Gso8g1536 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 249 IPR013083 -
Gso8g1536 317 Pfam Ring finger domain 201 243 IPR001841 -
Gso8g1536 317 ProSiteProfiles Zinc finger RING-type profile. 202 243 IPR001841 -
Gso8g1536 317 CDD RING-H2_RNF126_like 202 243 - -
Gso8g1536 317 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 21 312 - -
Gso8g1536 317 SUPERFAMILY RING/U-box 183 252 - -
Gso8g1536 317 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 21 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1536 Gso-Chr8 14952384 14954545 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1536 1 291 C3H Transcription Factor Family AT1G68180 31.773 1.75e-43 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1536 K11982 - gmx:100793656 653.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g1536 8 14952384 14954545 Gso8g1536 8 14952384 14954545 ECH