Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1517 ATGTCATTCCGCAGCATAGTTCGTGATGTAAGGGATAGTTTCGGGAGCTTATCTAGGCGTAGTTTTGATGTCAGACTTACTGGGCATCATAGAGGAAAATCTCAAGGATCAGTGCAGGATTTGCATGACCAGCCTCTAGTAATTCAAAATAGCCGCTGGGCTAGCTTACCCCCAGAATTACTATTTGATATCATTAGACGGCTAGAGGAGAGTGAGAATACATGGCCTGCTCGAAAGCATGTTGTTGCATGTGCTGCAGTTTGCCAGTCTTGGAGGAATATGTGCAAGGACATCGTTAAGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAGCCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCTAATTTAACATACCACCTATTCCTTTGTCTCAGCCCTGCTTTGTTAGTTGAAAATGGAAAATTCCTCCTTTCTGCTAAGAGGACAAGGAGAACAACTTACACAGAGTACGTTATTTCCATGGATGCTGACAACATCTCTAGATCCAGTAACACTTACATTGGAAAGCTGAGATCAAATTTTCTTGGTACAAGATTCATTATATGCGATACACAGCCTCCATACTCTTCTGCCCATATATGCCCTCCTATGACTGGGAAGACGAGCCGTAGATTTTATTCCAAAAAGGTCTCGCCTAAGGTCCCATCTGGGAGTTACAACATAGCTCAGGTAACATATGAATTAAATGTGCTTGGAACTCGAGGCCCAAGAAAGATGCACTGCGTTATGCATTCAATACCAGCTTCAGCACTTGATGCAGGCGGCACTGTTCCTGGCCAGCCAGAGCTTCTTCCTCGTCCCTTGGAGGACTCGTTTCGGAGCATCTCGTTTTCAAAGTCTCTAGATCGTTCGATTGAGTTCAGCAGTTCACGATTTTCTGAGATTGGGGAATCTATCATCGAGGATGATGATGGCAAGATGAGACCCTTGGTTCTGAAAAACAAGCCTCCAAGATGGCACGAACAGTTACAATGTTGGTGCCTTAATTTCCGTGGACGAGTAACAGTTGCGTCTGTTAAAAACTTTCAGTTGATTGCTGCCACCCAACCACCCGCTGGTGCACCTACACCATCTCAACCAGCTCCACCGGAGCATGATAAAATCATTCTTCAATTTGGCAAAGTTGGTAAAGACATGTTCACCATGGATTATCGGTACCCTTTATCTGCATTCCAAGCTTTTGCAATATGCTTGAGCAGCTTTGACACCAAATTGGCTTGTGAATAA 1284 0.4416 MSFRSIVRDVRDSFGSLSRRSFDVRLTGHHRGKSQGSVQDLHDQPLVIQNSRWASLPPELLFDIIRRLEESENTWPARKHVVACAAVCQSWRNMCKDIVKSPEFCGKLTFPVSLKQPGPRDGIIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSNTYIGKLRSNFLGTRFIICDTQPPYSSAHICPPMTGKTSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCVMHSIPASALDAGGTVPGQPELLPRPLEDSFRSISFSKSLDRSIEFSSSRFSEIGESIIEDDDGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPPAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1517 427 Pfam F-box domain 53 100 IPR001810 GO:0005515
Gso8g1517 427 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 427 - -
Gso8g1517 427 PANTHER TUBBY-RELATED 1 427 - -
Gso8g1517 427 Gene3D Tubby Protein; Chain A 112 421 IPR025659 -
Gso8g1517 427 ProSitePatterns Tub family signature 1. 349 362 IPR018066 -
Gso8g1517 427 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Gso8g1517 427 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Gso8g1517 427 PRINTS Tubby superfamily signature 237 264 IPR000007 -
Gso8g1517 427 PRINTS Tubby superfamily signature 331 348 IPR000007 -
Gso8g1517 427 PRINTS Tubby superfamily signature 349 365 IPR000007 -
Gso8g1517 427 PRINTS Tubby superfamily signature 384 403 IPR000007 -
Gso8g1517 427 PRINTS Tubby superfamily signature 405 427 IPR000007 -
Gso8g1517 427 Pfam Tub family 114 422 IPR000007 -
Gso8g1517 427 ProSitePatterns Tub family signature 2. 412 427 IPR018066 -
Gso8g1517 427 Gene3D - 48 100 - -
Gso8g1517 427 SUPERFAMILY Tubby C-terminal domain-like 102 427 IPR025659 -
Gso8g1517 427 SUPERFAMILY F-box domain 49 97 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1517 Gso-Chr8 14786869 14791076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1517 1 427 TUB Transcription Factor Family AT1G76900 69.762 0.0 611
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gso8g1517 Tub 4.7e-116 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1517 K19600 - gmx:100799279 840.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g1517 8 14786869 14791076 Gso8g1517 8 14786869 14791076 ECH
Gso15g0427 15 3890459 3894907 Gso8g1517 8 14786869 14791076 GST