Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1483 ATGGCGGAGGGTGCTTCTTACGGATTGCGTCGTTCATTAGATATTCAGCAATTACAATTTGAAGCCCAGCATCGATGGTTGCGACCTGCAGAAATTTGTGAAATTCTTCGTAATTATCGGATGTTTCATATCACATCAGAGCCTCATAACAGGCCACCAAGTGGTTCACTTTTTCTTTTTGATCGAAAAGTTTTGAGATACTTTAGAAAGGATGGGCATAATTGGAGAAAGAAAAAGGATGGAAAAACTGTGAAAGAAGCTCATGAAAAGTTGAAGATTGGAAGTGTTGATGTGTTGCACTGCTACTATGCCCATGGAGAAGAAAATGAAAATTTTCAAAGGCGAAGCTACTGGATGCTTGAACCGGATATGATGCACATAGTATTTGTCCATTACTTGGAAGTTAAGGGTAACAAAAATATTGTAGTAAATACTGAAGGTGATGAGATCCCATCAGATTCCCAAAAGGTAACTTCTTCATCGTCTAGCCTTCCCACACATCATAGCAGTGTTCCTTCTCTGAGTACAGATTCCGTGAGCCCAACAACCAGTTTGATGTCTTTACGTGAAGATGCTGATTCTGAGGATATCCACCAAGCAAGTTCTGGGTTGCGCCCATTATATGAGTCACAACATAGTGGGAATGGTCCATTGACGGAAAAGATTGGTGCTGGTTCGAACAGTTCATATCTTATTCATCCCTTTTCAGGTGATTATGAACAGTCATCAATTTCTGGAACGGATTATATCCCTGTTGTTCATGGGGATAAATTTAGAGGAAATGATACTGCTTATATTGATGGTCAGAAAACACATGACGTGGCAACATGGAGCACTGTCTTGCAAAGCACTGCCAAATTGCATAATGATCCTTCTCTTGCATCATCTCCTTCCATTCCATCTAGTTCAATGGGAGATGTCCTTGAACAAGAACATACCATTTTTAGTGACCTTTTAATGAGCAAAAGTGGTCTCACTGAGGTAGCAGAGAGCTCTCAGTCTCTCCAATCAAATTGGCAGATTCCTTTTGAAGACAATTCAGGAGGCATGCCAATGTTAACCCAAACCCAGACATTTGGTCTGCAATTTAGATCTGATTATGGCACCGGTTTACTAGGGAATGAAACTCGTAATGCATGTTCTGAAAGTGCTGCGATCCTGTACAGTTTTAATGGTGAACCAAAAGAGCAGCCTATGCAGCAAAACTATCTACAAGAGCTTGAAGATGGACAATCTCAACATGCACTAAAATCCAATTCTGCAAATAAAGTTCCTGATGAAGAAACTATCAACTATGGCTTAACAGTGAAGCGCACATTATTGGACAAAGACGAGAGCCTGAAGAAGGTTGATAGCTTCTCTCGGTGGATTACTAAGGAACTTGGAGAGGTGGCTGATTTGAATATGCAGTCCTCACCTGGTATTTCATGGAGTACAGATGAATGCCAGCATGTGATAGATGATACCTCATTGAGCCCATCTCTCTCTCAAGATCAACTGTTTAGTATAAATGATTTTTCACCTAAATGGGCTTATGCTGAGTCCGAAATTGAGGTGTTGATTATTGGATCATTTTTGAAGAGTCAACCAGAGGTGACAACCTGCAACTGGTCCTGTATGTTTGGGGAAGTTGAGATTCCCGCCAAGGTCTTAGCTGATGGAATTTTGTGCTGTCAAGCTCCGCGTCATAAGGTTGGACGGGTCCCTTTCTATGTGACATGTTCCAATAGGTTAGCTTGTAGTGAAGTGCGGGAATTCGATTTCAGAGAGGGCTTTGCCAGAAATGTAGATTTTGCAGATTTTTATAACAGTTCTGAAATTCTGCTTCATTTGCGACTAGAGGATTTTCTTTCTTTAAAGCCAGTGGACCCTTCAAATCATTCTTTTGAGGGTGATATGGAGAAAAGAAACTTGATTTTTCAGCTCATTTCACTGAGAGAGGTGGAGGAATATTCAATTAAGGATGAAGTGACTACAGAATTGGATATATCCCAACACATGGTGAAGGAGCATCTGTTTCACAAGCAGTTTAAAGAGAAGCTGTACTCATGGCTTCTTCACAAAGTAACTGAGAGTGGTAAAGGGCCAAATGTATTAGATGAGGATGGGCAAGGTGTGCTACATTTAGCAGCTTTTCTTGGCTATGATTGGGCCATAAATCCAATTATATCTGCTGGAGTTAATATCAACTTCCGAGATGTGAATGGATGGACAGCTCTTCATTGGGCTGCATCCTGTGGCAGAGAGCGCACAGTTGCTGTCCTTGTCTCCATGGGTGCAGATTGTGGAGCATTGACAGATCCATCTCCCTCATCTCCAGCAGGTAGAACAGCTGCAGATCTTGCCTCTAGCTATGGGCACAAAGGAATTTCTGGTTTTCTTGCCGAGTCTTCATTAACTCACCACCTCGAAACCCTCACAATGGATGATCAAAAAGGTGGTCGGCAAGAAATTTCAGGAATGAAAGCGGTGCAGACAGTTTCAGAACGATCTGCAACACCCGTGCACTTTGGTGATATGCCAGATCTCTGCCTCAAGGATTCGCTTACTGCTGTGCGTAATGCAACACAAGCTGCTGATCGTATACATCAAGTATACAGAATGCAGTCATTCCAGAGGAAGCAGTTAACTCAGTATGAAAGTGATGAGCTTGGATTGTCAGATCAGCAAGCACTTTCCCTTCTAGCTTCCAGAGCATGCAAATCTGGACAAGGAGATGGTTTAGCCAATGCTGCTGCAGTACAGATACAGAAAAAGTTTCGTGGTTGGAAGAAGAGAAAAGAATTCTTGATGATTCGTCAAAGAGTTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAAGTAAGGAAACAGTATAAACCAATCATCTGGTCTGTGGGAATCCTGGAGAAGATCATATTACGTTGGAGGCGCAAGGGTAGTGGTTTACGTGGATTTCGACCAAATGTCATTAATGAAGTCCCCGATCAACAAAATAATTCTCTGAAAGAGGATGATTATGATTATCTCAAGGAGGGACGGAAACAAAAGGAAGAAAAGATCCAAAAGGCCCTATCAAGGGTGAAGTCCATGGCTCAGTATCCAGAGGCACGTGCTCAATACCGGCGTCTGCTAAATGTTGTTGAGGACTTCCGTCAAACCAAGGCATCTAACGAGGGTTTGATCAATTCTGAAGAGACAGTTGATGGTATGGAGGATTTGATTGATATTGATATGCTTTTAGACGATGATAATTTCATTCCTATAGCATTTGATTGA 3258 0.419 MAEGASYGLRRSLDIQQLQFEAQHRWLRPAEICEILRNYRMFHITSEPHNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKIGSVDVLHCYYAHGEENENFQRRSYWMLEPDMMHIVFVHYLEVKGNKNIVVNTEGDEIPSDSQKVTSSSSSLPTHHSSVPSLSTDSVSPTTSLMSLREDADSEDIHQASSGLRPLYESQHSGNGPLTEKIGAGSNSSYLIHPFSGDYEQSSISGTDYIPVVHGDKFRGNDTAYIDGQKTHDVATWSTVLQSTAKLHNDPSLASSPSIPSSSMGDVLEQEHTIFSDLLMSKSGLTEVAESSQSLQSNWQIPFEDNSGGMPMLTQTQTFGLQFRSDYGTGLLGNETRNACSESAAILYSFNGEPKEQPMQQNYLQELEDGQSQHALKSNSANKVPDEETINYGLTVKRTLLDKDESLKKVDSFSRWITKELGEVADLNMQSSPGISWSTDECQHVIDDTSLSPSLSQDQLFSINDFSPKWAYAESEIEVLIIGSFLKSQPEVTTCNWSCMFGEVEIPAKVLADGILCCQAPRHKVGRVPFYVTCSNRLACSEVREFDFREGFARNVDFADFYNSSEILLHLRLEDFLSLKPVDPSNHSFEGDMEKRNLIFQLISLREVEEYSIKDEVTTELDISQHMVKEHLFHKQFKEKLYSWLLHKVTESGKGPNVLDEDGQGVLHLAAFLGYDWAINPIISAGVNINFRDVNGWTALHWAASCGRERTVAVLVSMGADCGALTDPSPSSPAGRTAADLASSYGHKGISGFLAESSLTHHLETLTMDDQKGGRQEISGMKAVQTVSERSATPVHFGDMPDLCLKDSLTAVRNATQAADRIHQVYRMQSFQRKQLTQYESDELGLSDQQALSLLASRACKSGQGDGLANAAAVQIQKKFRGWKKRKEFLMIRQRVVKIQAHVRGHQVRKQYKPIIWSVGILEKIILRWRRKGSGLRGFRPNVINEVPDQQNNSLKEDDYDYLKEGRKQKEEKIQKALSRVKSMAQYPEARAQYRRLLNVVEDFRQTKASNEGLINSEETVDGMEDLIDIDMLLDDDNFIPIAFD* 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1483 1085 Gene3D Immunoglobulins 496 591 IPR013783 -
Gso8g1483 1085 Gene3D - 909 955 - -
Gso8g1483 1085 SUPERFAMILY Ankyrin repeat 690 796 IPR036770 -
Gso8g1483 1085 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 909 959 IPR027417 -
Gso8g1483 1085 MobiDBLite consensus disorder prediction 146 183 - -
Gso8g1483 1085 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 1085 - -
Gso8g1483 1085 Gene3D - 675 862 IPR036770 -
Gso8g1483 1085 SMART CG_1_2 18 136 IPR005559 GO:0003677
Gso8g1483 1085 SUPERFAMILY E set domains 503 588 IPR014756 -
Gso8g1483 1085 ProSiteProfiles IQ motif profile. 909 938 IPR000048 GO:0005515
Gso8g1483 1085 ProSiteProfiles Ankyrin repeat region circular profile. 735 761 - -
Gso8g1483 1085 Pfam IPT/TIG domain 503 577 IPR002909 -
Gso8g1483 1085 ProSiteProfiles Ankyrin repeat profile. 702 734 IPR002110 GO:0005515
Gso8g1483 1085 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Gso8g1483 1085 SMART ANK_2a 774 803 IPR002110 GO:0005515
Gso8g1483 1085 SMART ANK_2a 735 764 IPR002110 GO:0005515
Gso8g1483 1085 SMART ANK_2a 702 731 IPR002110 GO:0005515
Gso8g1483 1085 Pfam IQ calmodulin-binding motif 934 953 IPR000048 GO:0005515
Gso8g1483 1085 Pfam IQ calmodulin-binding motif 911 929 IPR000048 GO:0005515
Gso8g1483 1085 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Gso8g1483 1085 ProSiteProfiles Ankyrin repeat profile. 735 767 IPR002110 GO:0005515
Gso8g1483 1085 ProSiteProfiles IQ motif profile. 932 956 IPR000048 GO:0005515
Gso8g1483 1085 SMART iq_5 931 953 IPR000048 GO:0005515
Gso8g1483 1085 SMART iq_5 908 930 IPR000048 GO:0005515
Gso8g1483 1085 Pfam Ankyrin repeats (3 copies) 707 796 IPR002110 GO:0005515
Gso8g1483 1085 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 1 1085 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1483 Gso-Chr8 14428683 14440115 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1483 1 1066 CAMTA Transcription Factor Family AT5G64220 53.676 0.0 1083
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Gso8g1483 CG-1 1.5e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1483 K21596 - gmx:100780357 2119.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0460 15 4204197 4215391 Gso8g1483 8 14428683 14440115 GST
Gso5g0996 5 32865626 32876062 Gso8g1483 8 14428683 14440115 PCT
Gso8g0596 8 5547970 5559441 Gso8g1483 8 14428683 14440115 PCT
Gso8g1483 8 14428683 14440115 Gso5g0996 5 32865626 32876062 PCT
Gso8g1483 8 14428683 14440115 Gso8g0596 8 5547970 5559441 PCT