Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1478 ATGGAAGCAGAAGCAGCACCGTTGAAGTTGGAGTCCCTTGTGTGCATAGACTCCACCACTCTCTCTCATTCCGAGCTCCTCGCTCTTTCTCTCTCATCTCTCTCCACATTCGACCTCCGCTCCACCCATGACCTCGTCACTCCCAAGATCGACCCTTCCCTCTTCAACGAGAGCACCGGCTCCCACCGCCAAACCTACTCCCGCCCCCAGCAGTCCTCCCCCACCGGCCGCCGCCGCCGCCTCGCCGGCCTCCTCCCCAACAACCTCCCTCCCCTCCCCGAAAACCGCCTCATCATCGACTACCTCAAACAACTCATCAGAGACGACCCCAAGTTCGACCAAGTCCAACTCACTCCCCCTTCCCCTTCTCCTTCTCCTTCTCTCCCCCAACTCAAGAGGAAGCGTGGCAGAAAGCCCAAAGTCAAACTCCACTTGGACCCCTGCTACCGCGGTATCGACATAATTGTCAATCCAAACGGCGTCGCTGTGGATCTCCACCAACTCGCCAACTCCCAAGACCCCTTCGCTGAGGAACTCAAGAGACGCACCGAGGGTTTGCACAACGAAGAGGAGCTGCTAGGGTTTCTGAGAGACTTGCCCGGACAGTGGGGGAGCCGGAGGAAGAAGCGGAGGATCGTCGACGCCGCGGATTTCGGCGGCGACGTCTTGCCTCTTAGCTGGAAGATTCTTCTCGGTTTGAAGAGAAAGGATGGCCGTGCATGGATCTATTGCCGCAGATACATTAGCCCCAGTGGACAGCATTTTGTGTCTTGCAAAGAGGTTTCTTCCTATCTGCAGTCTCTTTTGGATAATAATGGTGATGCACAGTTGCAAATTATGAGGACTGAAAATGTAGTGCAGGAACACAATGTGCCTGCTGAAAATTCTGCAGGTGTTGCCCAGGAGCATCAAGATGAGAGGCAGATTGTTGCTGTGAACTCGGATGTGTCTGCTGCTAATGAACGAGAGAAGGAGGTTGCCTTGTTGGGGATTGAAAATCTCGCGGATGTGCAGATTCACGACCTGTTTGAATGTCGCAAGTGCAACATGAGTTTTGATGCGAAGGATTTGTACTTGCAGCACCTGTTGTCATTTCACCAGAGGACGACGAGGCGGTATCGACTTGGTTCATCAGTTGGAGATGGAGTTATAATTAAGGATGGGAAGTTTGAGTGCCAGTTCTGCCATAAGGTGTTTCTTGAAAGGCGTCGCTACAATGGTCATGTGGGGATCCATGTTAGGAATTATGTGAGGAAAGTTGAAGATTTGCCGGGTCAGGCAAATGTCCAGGGGACAGATGACAAGTCTCCTGTCAGGGGGCAGGATGTGCCTTTAAGGATATCAAAGATGGATGCCCTCATTGAAATTGCTCAAAACTCTATTATGGAGGATTCTGTCACTGAACCCCATAGTTCAGCTAAACTGAATAGGATTCCTGCTTCAGATATTGCTGTTGGTTACATAGATCAAGACAGAAACTCCGAGTCTCCTATCAGTGAACAGAAAATGGAAGATAGCATGACTGGAAATAATGTGGATCATGATTTGGATGAAGAATTAGTAGAGGAAATTGATGATGATAACCATGTGATTAATGTAAAGATGGTTACTTTTCTGGATAACGTGGGTTTGTTATCTGTAAATAAGCAGGATGTTAATGTACCTGAGACTTCTAAGGTAAAAGATGATGTGCCATTGACTATTGAGGAACTGGATCAGTCTGGGATGGATTTGGATGAGGATTCTCACAACTGTTTACTTCCTTTATCTGAACATCACATAATACCAGAATCTGAAAAGAGTGAAAATTCAGGATGTGCTAATACTAAGGGTCTATTTATACTTGATGAAGACATCAGTAACAAGACTGAGTTGGAATTTGGTTTAAATGGCTTGAAGGATGTGCCTGTTACTGTGAGCACTAATGTCCAAGAGATGGTAAGGCCAGCTTCTCAAGAAAATGTGGCACACTCTAGGGTTTTTAACTCCTCCATATCCACAGAACAATCTTTGGATTGTTTACCTGCATTCAGCTCTGATAAGGGAGAAGAACAGTTTTGTAGTGTTGACCATGAACATGATAATGTGAAGGGGTTCCAGGAATTGAGATTTGATGAAATAGATACTGCTGAGTGTGATTTTGCAAGGGTTCAAGTTTCTCCTTCTCTTCCTGATGTACCAACTGAATTGACAAATAACACAGTGGTGGAAGGGACGTGTGCATCCCCAGTTCAGTTTGAATCACAAGAAGTTATGCTAAATATTGGTGGCAGAAATCAGCTTACAACTGTGTGTGTATGGTGTGGAATAGAGTTTAACCATGATGCTGTTAATTCTGAAATACAACCAGATTCTGTTGGATTCATGTGTCCAGCTTGTAAGGCAAAAATCTCTGGTCAAGTCAATGTGTTATTGGACTGTGGATCGCCAAATGCTGGCTGTCTATAG 2448 0.4665 MEAEAAPLKLESLVCIDSTTLSHSELLALSLSSLSTFDLRSTHDLVTPKIDPSLFNESTGSHRQTYSRPQQSSPTGRRRRLAGLLPNNLPPLPENRLIIDYLKQLIRDDPKFDQVQLTPPSPSPSPSLPQLKRKRGRKPKVKLHLDPCYRGIDIIVNPNGVAVDLHQLANSQDPFAEELKRRTEGLHNEEELLGFLRDLPGQWGSRRKKRRIVDAADFGGDVLPLSWKILLGLKRKDGRAWIYCRRYISPSGQHFVSCKEVSSYLQSLLDNNGDAQLQIMRTENVVQEHNVPAENSAGVAQEHQDERQIVAVNSDVSAANEREKEVALLGIENLADVQIHDLFECRKCNMSFDAKDLYLQHLLSFHQRTTRRYRLGSSVGDGVIIKDGKFECQFCHKVFLERRRYNGHVGIHVRNYVRKVEDLPGQANVQGTDDKSPVRGQDVPLRISKMDALIEIAQNSIMEDSVTEPHSSAKLNRIPASDIAVGYIDQDRNSESPISEQKMEDSMTGNNVDHDLDEELVEEIDDDNHVINVKMVTFLDNVGLLSVNKQDVNVPETSKVKDDVPLTIEELDQSGMDLDEDSHNCLLPLSEHHIIPESEKSENSGCANTKGLFILDEDISNKTELEFGLNGLKDVPVTVSTNVQEMVRPASQENVAHSRVFNSSISTEQSLDCLPAFSSDKGEEQFCSVDHEHDNVKGFQELRFDEIDTAECDFARVQVSPSLPDVPTELTNNTVVEGTCASPVQFESQEVMLNIGGRNQLTTVCVWCGIEFNHDAVNSEIQPDSVGFMCPACKAKISGQVNVLLDCGSPNAGCL* 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1478 815 SMART c2h2final6 343 366 IPR013087 -
Gso8g1478 815 SMART c2h2final6 390 412 IPR013087 -
Gso8g1478 815 ProSitePatterns Zinc finger C2H2 type domain signature. 392 412 IPR013087 -
Gso8g1478 815 ProSitePatterns Zinc finger C2H2 type domain signature. 345 366 IPR013087 -
Gso8g1478 815 Gene3D Classic Zinc Finger 331 415 - -
Gso8g1478 815 PANTHER METHYL-CPG-BINDING DOMAIN PROTEIN 5 803 - -
Gso8g1478 815 MobiDBLite consensus disorder prediction 52 77 - -
Gso8g1478 815 MobiDBLite consensus disorder prediction 113 139 - -
Gso8g1478 815 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 5 803 IPR037472 -
Gso8g1478 815 ProSiteProfiles Zinc finger C2H2 type domain profile. 390 417 IPR013087 -
Gso8g1478 815 SUPERFAMILY DNA-binding domain 221 269 IPR016177 GO:0003677
Gso8g1478 815 MobiDBLite consensus disorder prediction 48 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1478 Gso-Chr8 14385423 14390410 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso8g1478 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1478 - - gmx:100526917 1552.34