Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1465 ATGTCTGAGTCGGACACGAAGAAGAAGAAGCAGCAGCAGCGCAGCGGCGGAAAGCATGAAGGAGAAGAAGGGTTGATGATCAAGCCCCAGAGCTTCACTCCCCCCATCGACACCTCCCAATGGCCCATTCTCCTCAAAAACTACGAGCGCCTCAACGTCCGCACCGGCCACTACACCCCCATTCCCTCCGGCTACTCCCCCCTGAAGCGCCCCCTCTCCGAGTACCTCAAATACGGCGTTCTCAACCTCGACAAGCCCGCCAACCCTTCCTCCCACGAGGTCGTGGCCTGGATCAAGCGCCTCCTCCGCGTCGAAAAAACCGGCCACTCCGGTACCCTCGACCCCAAGGTCACCGGTAACCTCATCGTCTGCATCGACCGCGCCACCCGCCTCGTCAAGTCCCAGCAGGGCGCCGGTAAAGAATACGTCTGCATCGCCCGCCTCCACTCCGCCGTCCCCGACATCTCCAAGGTCTCCCGCGCCCTCGAAACCCTTACCGGCGCCGTCTTCCAGCGTCCCCCCTTGATCTCCGCCGTCAAGCGCCAGCTCCGGATTCGGACCATCTACGAAAGTAAGCTCCTTGAGTATGACCCTGATAGGCACTTGGTTGTTTTCTGGATTTCCTGTGAGGCTGGTACCTATGTTAGGACCATGTGTGTTCACTTAGGGTTGCTTCTTGGTGTGGGTAGCCACATGCAGGAGCTTAGGAGGGTTAGGTCCGGGATCATGGGGGAGAAGGATAACATGGTCAGCATGCATGATGTCATGGATGCTCAGTGGGTTTATGATAATTATAGGGATGAGACTTATTTGAGGAGGGTTGTTATGCCCTTGGAGATTCTCTTGACTAGCTATAAGAGGCTTGTTGTTAAGGACTCTGCTGTCAATGCTATTTGTTATGGTGCTAAGTTCATGATTCCTGGGTTGCTTAGGTTTGAGAATGATATTGATGTTGGGGAGGAGGTTGTACTTATGACTACTAAGGGTGAGGCTATTGCTCTTGGGATTGCTGAGATGACTACTGCTGTTATGGCCACTTGTGATCATGGGGTTGTGGCCAAGATCAAGAGGGTGGTCATGGATAGGGATACTTATCCAAGGAAGTGGGGTTTGGGACCCAGGGCTTCCATGAAGAAGAGGCTTATTAGTGAAGGGAAGCTCGATAAGCATGGGAAGCCCAATGAGAAGACTCCACAGGAGTGGCTTAGGAATCTGGTTTTGCCAACTGGTGGGGATAGCATGATTGCTGGCTTGGCTGCTGCACCGGAACCTGAGGACGACAAACTTCAGAAGAAGGAGGAGGGAGATGGGGAAGGGAAGAAGAGAAAGAAGCATGAAAGCACAGATAGCCTGGTTGCTGTTCCTGCTAAGAAGGCGAAAGTGGTAGATGAAGTGGAAGAGCTTGAAAAGCTAGAAAAGGTGAAGGTGAAGAAGGTAGATGAAGAGACTGTGGAGGTTGAAGTTGAGAAGAAAGAGAAGAAGAAGAAGAAGAAGAAGGATAAGGAGAACAGCGAGGTGGCCTCTTCGGATGAGGAGAAAACTGAGAAGAAGAAGAAGAATAAGGTTGAAGATGGTTCGCCGGAGTTAGACAAGTCTGAGAAGAAAAAGAAAAAGAAGAAAGACAAAGCTGCTGCCGCTGCTGCTGAAATTAGCAATGGAAAGGTGGATGACAGTAAAGCTGATAAGAGTGAAAAGAAGAAGAATTAA 1707 0.5144 MSESDTKKKKQQQRSGGKHEGEEGLMIKPQSFTPPIDTSQWPILLKNYERLNVRTGHYTPIPSGYSPLKRPLSEYLKYGVLNLDKPANPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDISKVSRALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVFWISCEAGTYVRTMCVHLGLLLGVGSHMQELRRVRSGIMGEKDNMVSMHDVMDAQWVYDNYRDETYLRRVVMPLEILLTSYKRLVVKDSAVNAICYGAKFMIPGLLRFENDIDVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKRLISEGKLDKHGKPNEKTPQEWLRNLVLPTGGDSMIAGLAAAPEPEDDKLQKKEEGDGEGKKRKKHESTDSLVAVPAKKAKVVDEVEELEKLEKVKVKKVDEETVEVEVEKKEKKKKKKKDKENSEVASSDEEKTEKKKKNKVEDGSPELDKSEKKKKKKKDKAAAAAAEISNGKVDDSKADKSEKKKN* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1465 568 SMART DKCLD_2 37 95 IPR012960 -
Gso8g1465 568 MobiDBLite consensus disorder prediction 424 451 - -
Gso8g1465 568 MobiDBLite consensus disorder prediction 472 568 - -
Gso8g1465 568 SUPERFAMILY Pseudouridine synthase 38 283 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Gso8g1465 568 SMART pua_5 286 360 IPR002478 GO:0003723
Gso8g1465 568 Coils Coil 529 549 - -
Gso8g1465 568 MobiDBLite consensus disorder prediction 414 455 - -
Gso8g1465 568 MobiDBLite consensus disorder prediction 472 535 - -
Gso8g1465 568 MobiDBLite consensus disorder prediction 1 31 - -
Gso8g1465 568 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 20 568 IPR004802 GO:0006396
Gso8g1465 568 TIGRFAM unchar_dom_2: uncharacterized domain 2 281 357 IPR004521 GO:0003723
Gso8g1465 568 Pfam TruB family pseudouridylate synthase (N terminal domain) 99 215 IPR002501 GO:0006396
Gso8g1465 568 Pfam tRNA pseudouridylate synthase B C-terminal domain 216 282 IPR032819 -
Gso8g1465 568 Pfam DKCLD (NUC011) domain 38 95 IPR012960 -
Gso8g1465 568 MobiDBLite consensus disorder prediction 1 25 - -
Gso8g1465 568 Coils Coil 479 501 - -
Gso8g1465 568 Gene3D Pseudouridine synthase 71 277 - -
Gso8g1465 568 Pfam PUA domain 286 358 IPR002478 GO:0003723
Gso8g1465 568 ProSiteProfiles PUA domain profile. 285 360 - -
Gso8g1465 568 SUPERFAMILY PUA domain-like 285 366 IPR015947 -
Gso8g1465 568 MobiDBLite consensus disorder prediction 554 568 - -
Gso8g1465 568 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 4 20 568 - -
Gso8g1465 568 CDD PseudoU_synth_hDyskerin 77 259 - -
Gso8g1465 568 TIGRFAM CBF5: putative rRNA pseudouridine synthase 45 370 IPR004802 GO:0006396
Gso8g1465 568 Gene3D PUA domain 38 369 IPR036974 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1465 Gso-Chr8 14276382 14278608 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1465 1 497 NAC Transcription Factor Family AT3G57150 76.152 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1465 K11131 - gmx:100780706 912.524
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0482 15 4374276 4376372 Gso8g1465 8 14276382 14278608 GST