Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1463 ATGGCGCATCGCTCACTTTTCCTCTCTCTCAGACGGAATAGCGGTTTGGCTTGTCTCCTGAACCGAACAAGATTCGTGTCTTCGGGTGCTGTGAGCAGTGATTTGGTGGAAGAGAGTGTGGAAGGTGTTGATGATGACCTAAGGAGCAGAATCTTCAGGCTTAGGCTCCCCAAGCGAAGCGCCACCAACGTTCTTCAGAAATGGGTCCTCCAAGGGAATCCTGTTACGCTCTCTCAGCTTCGGGATATATCCAAAGAGCTTCGAAGATCTCAACGTTACAAACACGCTTTGGAGATATCTGAGTGGATGGTTAGCCATGAGGAATACGAGTTATCAGACTCTGATTATGCAGCCCGCATAGATTTGACTACCAAAGTTTTTGGCATTGATGCTGCAGAGCGCTACTTTGAGGGTCTACCTCTTGCTACAAAGACTGCTGAAACATACACAGCACTCCTCCATTCTTACGCAGGAGCAAAATTGACTAAAAAGGCTGAGGAACTTTATCAAAGGATAAAGGATTCAAACCTTTCCTTTGATGCCGTTACTTACAACGAAATGATGACTCTTTACATGTCAGTGGGGCAGTTTGAAAAGGTCCCATCGGTTGTTGAAGAACTGAAACAACAAAAGGTTTCCCCTGATATCTTTACTTACAATCTATGGATAAGTTCCTGTGCCGCCATTCTTAATATTGATGAAGTTAGGAGGATTCTTGATGAAATGAGTCATGGTGCTGGTTCTAATGAAAGTTGGATAAGATATTTGAACCTGGCCAATATATATATTAGTGTAGGTCATCTTGATAACGCAAGTTCCAACACACTTGTTGAGACTGAGAAAAGGATCACCCAAAGGCAATGGATAACTTATGACTTCTTAATCATTCTATACGGTGGGTTGGGAAGTAAGGATAAACTTGATCAGATATGGAATTCCTTAAGAATGACCAAACAGAAAATGATTAGCAGGAATTACATCTGCATCATTTCTTCCTATCTGATGCTTGGTCATACCAAAGAAGTGGGTGAAGTTATTGATCAATGGAAGCAATCAACGACCACGGATTTTGATATGCTTGCCTGTAAAAAGATTATGGTTGCTTTTAGGGACATGGGCTTGGCTGAAATAGCCAACAACTTGAATATGATTCTCATTGAGAAGAACCTCAGTCTTGGAAGTGATTAA 1188 0.4192 MAHRSLFLSLRRNSGLACLLNRTRFVSSGAVSSDLVEESVEGVDDDLRSRIFRLRLPKRSATNVLQKWVLQGNPVTLSQLRDISKELRRSQRYKHALEISEWMVSHEEYELSDSDYAARIDLTTKVFGIDAAERYFEGLPLATKTAETYTALLHSYAGAKLTKKAEELYQRIKDSNLSFDAVTYNEMMTLYMSVGQFEKVPSVVEELKQQKVSPDIFTYNLWISSCAAILNIDEVRRILDEMSHGAGSNESWIRYLNLANIYISVGHLDNASSNTLVETEKRITQRQWITYDFLIILYGGLGSKDKLDQIWNSLRMTKQKMISRNYICIISSYLMLGHTKEVGEVIDQWKQSTTTDFDMLACKKIMVAFRDMGLAEIANNLNMILIEKNLSLGSD* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1463 395 Gene3D Tetratricopeptide repeat domain 85 258 IPR011990 GO:0005515
Gso8g1463 395 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 179 IPR002885 -
Gso8g1463 395 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 214 IPR002885 -
Gso8g1463 395 Pfam Pentatricopeptide repeat domain 169 226 IPR002885 -
Gso8g1463 395 PANTHER BNAC02G00860D PROTEIN 1 392 - -
Gso8g1463 395 PANTHER OS12G0527900 PROTEIN 1 392 - -
Gso8g1463 395 TIGRFAM PPR: pentatricopeptide repeat domain 148 180 IPR002885 -
Gso8g1463 395 TIGRFAM PPR: pentatricopeptide repeat domain 182 216 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1463 Gso-Chr8 14261910 14264863 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1463 50 349 EF-hand Containing Proteins AT1G02150 32.890 1.70e-53 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1463 - - gmx:100779635 770.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0484 15 4382992 4385928 Gso8g1463 8 14261910 14264863 GST
Gso8g1463 8 14261910 14264863 Gso8g1945 8 19582343 19589801 PCT
Gso8g1945 8 19582343 19589801 Gso8g1463 8 14261910 14264863 PCT