Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1438 ATGACTTGTTTTCCTTTATTATTCAGTAAGTCGTCGTCTTCTTCTGCGAGACACGAACCAGAAATTGATGAAGGCATTCATAATGTTAAACTCTACTCCTACAAAGAGCTAAGAAATGCCACTGAAGATTTTAGTCCAGCCAATAAAATTGGAGAGGGTGGTTTTGGTTCTGTCTACAAGGGACGGCTTAAAGATGGAAAAGTTGCTGCAATAAAAGTTCTTTCAGCTGAATCAAGACAAGGGGTGAAGGAGTTCTTGACTGAGATTAATGTGATCTCTGAGATACAGCATGAAAATTTGGTCAAGCTATATGGTTGCTGTGTGGAAAAAAATAACAGAATATTAGTCTACAATTACCTTGAGAACAACAGCCTATCACAAACTCTTCTAGGTGGAGGTCACAGTAGTCTCTACTTTGATTGGCGAACACGATGTAAAATATGCATTGGGGTTGCACGTGGGCTTGCCTATCTTCATGAAGAAGTGAGGCCTCATATTGTTCATAGGGATATAAAAGCAAGCAATATCCTCCTTGACAAAGATCTTACACCCAAGATTTCAGATTTTGGTCTTGCAAAGCTTATTCCAGCAAACATGACTCATGTCAGCACACGTGTAGCAGGAACAATAGGTTATTTGGCACCAGAGTATGCGATAGGAGGGAAGCTAACAAGGAAAGCAGACATTTACAGCTTTGGCGTCCTCCTTGGGGAAATAATCAGTGGAAGATGTAACACAAACTCACGACTACCAATAGAAGAACAGTTTCTTCTAGAGAGGACATGGGACCTTTATGAGCGAAAGGAATTGGTTGGACTGGTGGATATGTCACTAAATGGGGAATTCGATGCTGAGCAGGCTTGTAAGTTTCTGAAGATTGGCCTTCTTTGCACTCAAGAATCCCCAAAGCACCGGCCATCCATGTCTTCTGTGGTCAAGATGCTCACTGGAAAAATGGATGTTGATGACAGTAAGATAACAAAACCTGCCTTAATTTCTGATTTACTGGACCTCAAAGTTAGAGGGAACGAAGAAAGTAGTATTGATATGAAGAATTCATCTATGTATACAACCTTTTCTTCAGACAACCATGATACTACCACGTCATTTGCCACAACTACAACCTTCACAGCATAA 1137 0.4063 MTCFPLLFSKSSSSSARHEPEIDEGIHNVKLYSYKELRNATEDFSPANKIGEGGFGSVYKGRLKDGKVAAIKVLSAESRQGVKEFLTEINVISEIQHENLVKLYGCCVEKNNRILVYNYLENNSLSQTLLGGGHSSLYFDWRTRCKICIGVARGLAYLHEEVRPHIVHRDIKASNILLDKDLTPKISDFGLAKLIPANMTHVSTRVAGTIGYLAPEYAIGGKLTRKADIYSFGVLLGEIISGRCNTNSRLPIEEQFLLERTWDLYERKELVGLVDMSLNGEFDAEQACKFLKIGLLCTQESPKHRPSMSSVVKMLTGKMDVDDSKITKPALISDLLDLKVRGNEESSIDMKNSSMYTTFSSDNHDTTTSFATTTTFTA* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1438 378 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 372 - -
Gso8g1438 378 ProSiteProfiles Protein kinase domain profile. 44 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1438 378 Gene3D Transferase(Phosphotransferase) domain 1 120 330 - -
Gso8g1438 378 CDD STKc_IRAK 50 317 - -
Gso8g1438 378 Pfam Protein kinase domain 47 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1438 378 PANTHER - 2 372 - -
Gso8g1438 378 SMART serkin_6 44 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1438 378 Gene3D Phosphorylase Kinase; domain 1 14 119 - -
Gso8g1438 378 ProSitePatterns Protein kinases ATP-binding region signature. 50 72 IPR017441 GO:0005524
Gso8g1438 378 SUPERFAMILY Protein kinase-like (PK-like) 23 316 IPR011009 -
Gso8g1438 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1438 Gso-Chr8 13951331 13955799 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1438 32 370 Receptor kinase-like Gene Family AT1G56120 51.327 2.08e-111 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso8g1438 Pkinase 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1438 - - gmx:100816707 712.22