Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1422 ATGGCGAAACCCGGGCGAGGTCGTCGCTCTCACTCCGGCTCTGTTTCCGGCTCCTCCTCTCGCTCCTCTTCCCCCTCCGACTCCCGCTCCTCCTCTCGCTCGCGCTCCGTTTCTCGTTCCCGCTCTCCCTCGCGCTCCAGATCCTCCTCTCCCTCCTCCTCGTCTCCCTCCCGAAGTTCTCGCAGCCGCAGCCCTCCCCCACAGCGCCGCCGAAGTCCTGCTGATGCAGCTAGGCGAGGTCGGTCTCCTCCACCTCAATCTAAGAGAGCTTCACCTCCCCCAAGGAAACCTTCTCCTGTACGTGAATCACTTGTTCTTCATGTAGAAAAGCTCAGCAGAAATGTCAATGAAGGGCATTTGAAAGAAATTTTCAGTAACTTTGGTGAGGTTATAAGTGTGGAGTTGGCAATGGATCGAACTGTCAATCTTCCAAAAGGGTATGGATATGTGCAGTTCAAGACAAGAGGGGAGGCTGAAAAAGCATTATTGTACATGGATGGTGCCCAAATAGATGGCAATGTCATCAAGGCAAGATTTACTCTACCTCCAAGGCAGAAAGTTTCACCACCCCCAAAGACTTCTGCTGTTGCTCCAAAGAGAGAGATCCCCAGGACTGATAATGCTAGCGCAGATGTTGACAAGGATGGACCAAAACGGCAAAGAGAATCTTCTCCTCGTAGAAAACCTCCTCCCTCACCACGGAGGAGATCTCCTGTACCTAGAAGAGCTGGATCTCCAAGACGACCAGATTCTCCACGCCGTCGTGCAGATTCTCCTGTCCGTCGCCGAGTAGACTCTCCTTATCGTCGTGGAGGAGACACACCTCCTAGGAGGCGGCCTGTGTCTCCTGTAAGAGGTCGTTCTCCATCTCCACCTAGACGCCTTAGATCCCCTGCAAGGCTGTCACCTAGAAGGATGCGTGGAAGCCCAGGTCGAAGACGTTCACCTCCACCTCCTCCCAGGCGCCGATCACCACCTAGACGACCACGTAGTCCTCCTAGAAGGTCTCCAATTGGTCGTAGACGTACTCGCTCTCCAATACGTAGGTCTGCGCGCTCACGCTCAAGGTCATTCTCACCTCGCAGAGGTAGACCACCGGTTAGACGGGGAAGGTCATCATCCTACTCTGATTCCCCAAGTCCACACAAGGTATCCCGTAGATCAAAGAGTCGGAGCCCAAGAAGGCCTTTGAGAGGAAGAGGCAGTAGCAACAGCAGCAGCAGCAGTTCACCACCACCACCACCACCACCTCCACCTCGCAAGCCATAG 1269 0.5461 MAKPGRGRRSHSGSVSGSSSRSSSPSDSRSSSRSRSVSRSRSPSRSRSSSPSSSSPSRSSRSRSPPPQRRRSPADAARRGRSPPPQSKRASPPPRKPSPVRESLVLHVEKLSRNVNEGHLKEIFSNFGEVISVELAMDRTVNLPKGYGYVQFKTRGEAEKALLYMDGAQIDGNVIKARFTLPPRQKVSPPPKTSAVAPKREIPRTDNASADVDKDGPKRQRESSPRRKPPPSPRRRSPVPRRAGSPRRPDSPRRRADSPVRRRVDSPYRRGGDTPPRRRPVSPVRGRSPSPPRRLRSPARLSPRRMRGSPGRRRSPPPPPRRRSPPRRPRSPPRRSPIGRRRTRSPIRRSARSRSRSFSPRRGRPPVRRGRSSSYSDSPSPHKVSRRSKSRSPRRPLRGRGSSNSSSSSSPPPPPPPPPRKP* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1422 422 CDD RRM_RNPS1 106 178 IPR034201 -
Gso8g1422 422 SUPERFAMILY RNA-binding domain, RBD 90 190 IPR035979 GO:0003676
Gso8g1422 422 PANTHER BNAA09G56240D PROTEIN 1 404 - -
Gso8g1422 422 MobiDBLite consensus disorder prediction 204 229 - -
Gso8g1422 422 MobiDBLite consensus disorder prediction 298 368 - -
Gso8g1422 422 Gene3D - 6 188 IPR012677 -
Gso8g1422 422 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 1 404 - -
Gso8g1422 422 MobiDBLite consensus disorder prediction 1 102 - -
Gso8g1422 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 176 IPR000504 GO:0003723
Gso8g1422 422 SMART rrm1_1 105 178 IPR000504 GO:0003723
Gso8g1422 422 MobiDBLite consensus disorder prediction 11 67 - -
Gso8g1422 422 MobiDBLite consensus disorder prediction 181 422 - -
Gso8g1422 422 MobiDBLite consensus disorder prediction 246 276 - -
Gso8g1422 422 MobiDBLite consensus disorder prediction 408 422 - -
Gso8g1422 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 182 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1422 Gso-Chr8 13795564 13800983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1422 101 173 Eukaryotic Initiation Factors Gene Family AT1G34140 38.356 1.15e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1422 K14325 - gmx:100804778 280.796